PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022953296.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 452aa    MW: 51177.2 Da    PI: 5.9075
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022953296.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.42.5e-96684513374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d ++++++L+ l+elasp+gd+ q++a+yf++AL  + ++++ ++yk+l + ++++++ +++l+    f+e+sP+ +f+h++
  XP_022953296.1  68 TLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVA 162
                     6899**********************************************************9999998888888888888************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
                      N aIlea+ege+++HiiD++ + ++QWp+Ll++La+R++++p+l++T+v   ++  k  ++e+g+r++kfA+ +gvpfefn++   ++l+dl+ 
  XP_022953296.1 163 SNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTT-TTIVKSLMKEIGQRMEKFARLMGVPFEFNPItNLENLTDLTK 256
                     ***************************************************9.6679999***********************94455******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                     e+L+v+++Ea+a+n++ +l r+      +e+ r++v++++ksl+P+v+++ve+ead   ++++Fl+ f e+l++y+  fd+le+++ ++s+er +
  XP_022953296.1 257 EALKVEEDEAIAINCIGALRRVR-----IEE-RNNVVSMLKSLKPRVLTIVEEEADFisSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLV 345
                     *********************97.....555.889*********************9867889******************************** PP

            GRAS 285 vErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..............sgslv.lg 361
                     +Ere  +r+iv ++ c ++e     e++e+ ++W++rl+e+ F+ +++se++ +++k+ll+++k  g+ +  +              + + v l+
  XP_022953296.1 346 LERE-CSRSIVRLLGCDESEeqmGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYK-PGWALLRRaattatgkvherddDSCGVyLT 438
                     ****.89*********988832245899999********************************9.6655553333444455555555777777** PP

            GRAS 362 WkdrpLvsvSaWr 374
                     Wk++p+v+vSaW+
  XP_022953296.1 439 WKEEPVVWVSAWK 451
                     ************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    
MDITFFTAKE APTTFFNQSH DHHHHLHFSN LDMQSSTSHS SEYSPEQSPS AAAAAAATLA  60
ATGKWSSTLL KECARAISEK DSNKIHHFLW MLNELASPYG DSDQKMASYF LQALFCKATE  120
TGLTCYKTLV AIADKNHSFD SSLKLILKFQ EASPWTTFGH VASNGAILEA LEGETKLHII  180
DISNTLCTQW PTLLESLATR NDDTPHLKLT VVTTTTIVKS LMKEIGQRME KFARLMGVPF  240
EFNPITNLEN LTDLTKEALK VEEDEAIAIN CIGALRRVRI EERNNVVSML KSLKPRVLTI  300
VEEEADFISS KNNFLKCFEE CLRFYTLYFD MLEESFVTTS NERLVLEREC SRSIVRLLGC  360
DESEEQMGSE KREKGKQWSK RLKESAFSLA EFSEDVLDDV KALLKRYKPG WALLRRAATT  420
ATGKVHERDD DSCGVYLTWK EEPVVWVSAW KP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-135GRAS family protein