PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022952875.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

FAR1

Protein Properties

Length: 698aa MW: 80748 Da PI: 7.0095

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022952875.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.6e-24	76	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke ++w+v+++++ HnHel XP_022952875.1 76 EYYSNFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGYNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVSQWYVSQFSNVHNHELL 167 69******************8888.**************************************998767789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MFSPEMAMKL PANIWIRRQQ CPCGDWKCYI RYEGEDQASI SGRLVKSETV PSQLSSESVF 60 APYVGQIFKS DEDAFEYYSN FARKNGFSIR KARSTESQNL GVYRRDFVCY RSGYNQPRKK 120 ANVEHPRERK SVRCGCDAKL YLTKEIVDGV SQWYVSQFSN VHNHELLEDD QVRLLPAYRK 180 IQEADQERIL LLSKAGFPVN RILKVLELEK GVQPGQLPFI EKDVRNFVRT CKKTVEENDA 240 LLNEKRENEL LELLEICKAM AKRDTEFVFD YTRDENGKVE NLSWAYGDPI HAYSVLGDVV 300 SFDTSYRSLT YGLLLGVWFG MSNHGKAIIF GCVLLQEENS HSFSWALQKF VQFMRGKHPR 360 TILTDIDSGL RDAISRELPN TKHVVCIWHI LSKLSSWFLL PLGLHYADFK VQFDMLWHLE 420 NISDFEHQWD LLVAQFGLAS DKHIALLYLY RASWPFSFIR SSFLARTLTA DFFQSLETFL 480 KRILGAQTCL QVFFEQVSNA AYSGSRAKEG MQYLHIKTGM PIEEHAQSTL TPYAFNVLQN 540 EIVLSMQYVA TEMGNGSYLL QHYKKMDVER LVSWTQDDEQ VHCACKEFDH SGILCRHSIR 600 VLAVKNYFKL PDKYFLLRWR LQNSLGTIDD AHSQGRSEAC AQVFHSLAAT LLTESLISQE 660 RFNYVHRELS GLLEHVRTMP VVDEFSLNRT TVNEFNDP

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MFSPEMAMKL PANIWIRRQQ CPCGDWKCYI RYEGEDQASI SGRLVKSETV PSQLSSESVF  60
APYVGQIFKS DEDAFEYYSN FARKNGFSIR KARSTESQNL GVYRRDFVCY RSGYNQPRKK  120
ANVEHPRERK SVRCGCDAKL YLTKEIVDGV SQWYVSQFSN VHNHELLEDD QVRLLPAYRK  180
IQEADQERIL LLSKAGFPVN RILKVLELEK GVQPGQLPFI EKDVRNFVRT CKKTVEENDA  240
LLNEKRENEL LELLEICKAM AKRDTEFVFD YTRDENGKVE NLSWAYGDPI HAYSVLGDVV  300
SFDTSYRSLT YGLLLGVWFG MSNHGKAIIF GCVLLQEENS HSFSWALQKF VQFMRGKHPR  360
TILTDIDSGL RDAISRELPN TKHVVCIWHI LSKLSSWFLL PLGLHYADFK VQFDMLWHLE  420
NISDFEHQWD LLVAQFGLAS DKHIALLYLY RASWPFSFIR SSFLARTLTA DFFQSLETFL  480
KRILGAQTCL QVFFEQVSNA AYSGSRAKEG MQYLHIKTGM PIEEHAQSTL TPYAFNVLQN  540
EIVLSMQYVA TEMGNGSYLL QHYKKMDVER LVSWTQDDEQ VHCACKEFDH SGILCRHSIR  600
VLAVKNYFKL PDKYFLLRWR LQNSLGTIDD AHSQGRSEAC AQVFHSLAAT LLTESLISQE  660
RFNYVHRELS GLLEHVRTMP VVDEFSLNRT TVNEFNDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein