PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022952531.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 508aa MW: 55844.4 Da PI: 6.4019

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022952531.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.7e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_022952531.1 30 KGPWTAAEDGILIEYVKKHGEGNWNAVQKHTGLARCGKSCRLRWANHL 77 79******************************************9986 PP
2	Myb_DNA-binding	47.8	3.4e-15	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ +++++++lG++ W++ a+ ++ gRt++++k++w++ XP_022952531.1 83 KGSFSQEEERVIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 126 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MVESKGEKGR SEGEHHHLVG GDGGGRALKK GPWTAAEDGI LIEYVKKHGE GNWNAVQKHT 60 GLARCGKSCR LRWANHLRPN LKKGSFSQEE ERVIIELHAK LGNKWARMAA QLPGRTDNEI 120 KNYWNTRMKR RQRAGLPLYP LEIQQEAMAF HLQQHQHHHH HHQQQQHHSS SAAAVATNFS 180 AIRHKPDFNN HPNSVSIFNF SSSINNSPKN FSDGSSFYAA PTSQFKFFPE NNNGGRFALP 240 LSPVSPFSQI GQQMNQSLST PPQASFQLNY GDNYVCNSNS GLNSMILGAP YHHLIPGLET 300 ELPSIQTPPL STTPASSGTS GGDGIMVGTN SGLLDVVLQE AEARSRNEKQ SKEETSSAGD 360 LKQRTEQGST EEDDANLHVE SVLGSSGGEE AAAAAENYSD EFSSSYSSSR KKPRMEQLEE 420 MNSMDDDDLM SLLNNFQSGM PVPEWYPGSS DDDLGINLHN GPSLRELNGN GEEDDQRQKV 480 ASPSTVSSSR VLEWSLGSSC WNNMPSIC

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MVESKGEKGR SEGEHHHLVG GDGGGRALKK GPWTAAEDGI LIEYVKKHGE GNWNAVQKHT  60
GLARCGKSCR LRWANHLRPN LKKGSFSQEE ERVIIELHAK LGNKWARMAA QLPGRTDNEI  120
KNYWNTRMKR RQRAGLPLYP LEIQQEAMAF HLQQHQHHHH HHQQQQHHSS SAAAVATNFS  180
AIRHKPDFNN HPNSVSIFNF SSSINNSPKN FSDGSSFYAA PTSQFKFFPE NNNGGRFALP  240
LSPVSPFSQI GQQMNQSLST PPQASFQLNY GDNYVCNSNS GLNSMILGAP YHHLIPGLET  300
ELPSIQTPPL STTPASSGTS GGDGIMVGTN SGLLDVVLQE AEARSRNEKQ SKEETSSAGD  360
LKQRTEQGST EEDDANLHVE SVLGSSGGEE AAAAAENYSD EFSSSYSSSR KKPRMEQLEE  420
MNSMDDDDLM SLLNNFQSGM PVPEWYPGSS DDDLGINLHN GPSLRELNGN GEEDDQRQKV  480
ASPSTVSSSR VLEWSLGSSC WNNMPSIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	3e-72	MYB family protein