PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022950427.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 614aa    MW: 67330.8 Da    PI: 4.578
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022950427.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.47.8e-1122426142374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+ecA+ +s+++  +a ++L +l+e +s++gdp++R+a+yf+eAL +rl+  ++++        + e++s++ + ++k++++++P+ kf+hl
  XP_022950427.1 242 LKTLIECAR-LSESEPDRAAQMLIQLKESSSEHGDPTERVAFYFLEALCRRLSLRSENCL------VSCESTSDDFTLSYKALNDACPYSKFAHL 329
                     689******.56668899999********************************9444433......333334899******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIle +e+++r+HiiDf+isqG+QW+aLlqaLa+R+ g+p  +Ri g+ +p  g   +++l +tg+rLa+fA+ l+++fef++ + + +e+
  XP_022950427.1 330 TANQAILEITENASRIHIIDFGISQGVQWAALLQALATRSTGKPtGIRISGIPAPMLGncPATALFATGNRLAEFAKLLELNFEFDP-ILTPIEE 423
                     ****************************************776659********9999999**************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++r++++E+laVn++lql++llde+        +vLkl ksl+Pk+v++ e ea++n+  F++rf++al+yysa+f+sl+ klpr+s+er 
  XP_022950427.1 424 LNESSFRIQSEESLAVNFMLQLYNLLDETPRAVL---NVLKLAKSLNPKIVTLGEYEASLNRVGFFTRFTNALRYYSAIFESLDPKLPRDSNERL 515
                     **************************99998888...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae......rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsv 370
                      +E+ +lgr+iv vv  e ++      ++er+e++e+W++ +e++GF++v+ls++a +qak ll k++ s +y + e+s+ ++ l Wkd p+++v
  XP_022950427.1 516 QLEKLVLGRRIVGVVGPESSSaaaaggKTERMEEKEEWKMLMENSGFEAVNLSHYARSQAKILLWKYDySSEYCLMESSAGFLsLAWKDVPIITV 610
                     ***************87765433334479***************************************9999*99999887777*********** PP

            GRAS 371 SaWr 374
                     S+Wr
  XP_022950427.1 611 SSWR 614
                     ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    
MANMCADSGN LMAIAQQVMK QKQLQEQQQQ QHPQQSPQQL TGPCTFGLNP WTASNHSLSG  60
APDLGFGLSG AGFPDPFQVQ RVVDGGDTSF QFPNLEHHSS AFRFTDFDGG AAAEFDSDEW  120
MDSLIVGGDS TESSNLPSGC EAWQSNSDFA FYGADPFIPC PSRLTIPCSS PSDLNRVIFP  180
DPPKSQTAVQ PPVVSWTGLT SATPPAVLKD TQVPNPPLIV HKSEDNGGSS SSAETESTPP  240
LLKTLIECAR LSESEPDRAA QMLIQLKESS SEHGDPTERV AFYFLEALCR RLSLRSENCL  300
VSCESTSDDF TLSYKALNDA CPYSKFAHLT ANQAILEITE NASRIHIIDF GISQGVQWAA  360
LLQALATRST GKPTGIRISG IPAPMLGNCP ATALFATGNR LAEFAKLLEL NFEFDPILTP  420
IEELNESSFR IQSEESLAVN FMLQLYNLLD ETPRAVLNVL KLAKSLNPKI VTLGEYEASL  480
NRVGFFTRFT NALRYYSAIF ESLDPKLPRD SNERLQLEKL VLGRRIVGVV GPESSSAAAA  540
GGKTERMEEK EEWKMLMENS GFEAVNLSHY ARSQAKILLW KYDYSSEYCL MESSAGFLSL  600
AWKDVPIITV SSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein