PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949092.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 471aa MW: 53315.8 Da PI: 8.4307

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949092.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00089	83	101	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C CgksF ++ L H++ XP_022949092.1 83 CRECGKSFQSWKALFGHMK 101 ******************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MEGDREFKHL CKLCNRSFPC GRSLGGHMRS HLIESQAETG ENLKKMKLVD KFLGAGVSDG 60 YSLRKNPKKT CRLAEFSAED RFCRECGKSF QSWKALFGHM KCHSIETERV SSNLEFEGHS 120 DDDHGNRSRR KTRYMAAETD SSSVSDHNDQ EQEEVALCLM MLSRDVGGFY STTAESLLPK 180 THFPKVVQAI PSVCVGSKMV KLKEFHSRMD SGYLKFERTT SEFSAYIVKM NKNNEKYGSS 240 SNNQTELNPP QFMSSGFNSD QRKFQELSTG ELRSNSFKRS LPNELNSEGY KSRVKRSKFQ 300 CNSCHKVFHS YQALGGHRAS HKKAKGCLAS SKTESSENSI ETEISIDPTF ESKPTPTVYE 360 MENQQEPEIH MGYEKKNRKH HQCSICFRIF SSGQALGGHK RSHLISGSEP RNKMPQQTTP 420 IRKPEPELRD YLDLNLPAPI DEEGSSNHLS TIEPWWVGGS QSHEPPLVGL I

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MEGDREFKHL CKLCNRSFPC GRSLGGHMRS HLIESQAETG ENLKKMKLVD KFLGAGVSDG  60
YSLRKNPKKT CRLAEFSAED RFCRECGKSF QSWKALFGHM KCHSIETERV SSNLEFEGHS  120
DDDHGNRSRR KTRYMAAETD SSSVSDHNDQ EQEEVALCLM MLSRDVGGFY STTAESLLPK  180
THFPKVVQAI PSVCVGSKMV KLKEFHSRMD SGYLKFERTT SEFSAYIVKM NKNNEKYGSS  240
SNNQTELNPP QFMSSGFNSD QRKFQELSTG ELRSNSFKRS LPNELNSEGY KSRVKRSKFQ  300
CNSCHKVFHS YQALGGHRAS HKKAKGCLAS SKTESSENSI ETEISIDPTF ESKPTPTVYE  360
MENQQEPEIH MGYEKKNRKH HQCSICFRIF SSGQALGGHK RSHLISGSEP RNKMPQQTTP  420
IRKPEPELRD YLDLNLPAPI DEEGSSNHLS TIEPWWVGGS QSHEPPLVGL I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	5e-28	C2H2 family protein