PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949056.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 394aa MW: 43716.7 Da PI: 6.503

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949056.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	32	52	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+ksFs+ L H+r+H XP_022949056.1 32 CKLCNKSFSNGKVLGGHMRSH 52 *******************99 PP
2	zf-C2H2	13.5	0.00022	100	120	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F ++ L H+r H XP_022949056.1 100 CKICGKGFDSSKALFGHMRHH 120 99*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MISASDSGCV TQNPSMELHL QDHQEQTKQH LCKLCNKSFS NGKVLGGHMR SHRSTQNPPK 60 KRKKNSITAS YSLRENPKKS WKFSAPIPQN PQTPSQENCC KICGKGFDSS KALFGHMRHH 120 SGRRKESVQK SKEKECNNKD LGNLKSLRCQ SPIAGGQSDG ETLGLLRRKR SRRTRCKLSN 180 PYCCAASPCS SDLIEYSSSC VVDGIEPDVE ELALCLLMLS KGVDHYGGEF SSESMGGSHC 240 SGFKAKSPLK RATHLDLDLD LDLDLDSEEE EERAKVGVFP EVGRYLKPLK KKCEIEGFYV 300 KVSEEEVNGE SGKEGKHQCG VCLKVFGSGK ALGGHKRAHL LKPNSMDLEE EDDEEDEDDD 360 EEDDDDEFKP WWNGDGDDHH NGGRQLVEGL ASSN

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MISASDSGCV TQNPSMELHL QDHQEQTKQH LCKLCNKSFS NGKVLGGHMR SHRSTQNPPK  60
KRKKNSITAS YSLRENPKKS WKFSAPIPQN PQTPSQENCC KICGKGFDSS KALFGHMRHH  120
SGRRKESVQK SKEKECNNKD LGNLKSLRCQ SPIAGGQSDG ETLGLLRRKR SRRTRCKLSN  180
PYCCAASPCS SDLIEYSSSC VVDGIEPDVE ELALCLLMLS KGVDHYGGEF SSESMGGSHC  240
SGFKAKSPLK RATHLDLDLD LDLDLDSEEE EERAKVGVFP EVGRYLKPLK KKCEIEGFYV  300
KVSEEEVNGE SGKEGKHQCG VCLKVFGSGK ALGGHKRAHL LKPNSMDLEE EDDEEDEDDD  360
EEDDDDEFKP WWNGDGDDHH NGGRQLVEGL ASSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	64	KKRKK
2	60	82	KKRKKNSITASYSLRENPKKSWK
3	61	83	KKRKKNSITASYSLRENPKKSWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	8e-14	C2H2 family protein