PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022948575.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 725aa MW: 79345.2 Da PI: 7.0492 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 302 | 322 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022948575.1 302 PCPDFRK-GACRRGDMCEYAHG 322 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence |
MCGGPEKSNS ASTTTSASSP NPKDMSHLTV DCEDSFYSLL ELASDNDAEG FKRLMGSDLL 60 SLNKSGLWYV RQKGSKQVVH EHRTPLMVAA TYGCVDVLKL ILSYPEVDVN LSSGTDKSTA 120 LHCATSSGSV NAVDIVDLLL SAGADPNAKD INGDRPVDVI FVHPKLQKQN TMFRLEELLN 180 NHSNGSMDVS CLRLSIKMPD SGSPPLSSSL EDEFPSPPKS MSSPKFTDGF ATTKEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP 360 LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFAQSM SPSSNGVSHS 420 SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDFNV LPNFDNQPRI LNDINCFSQP 480 RPSAISVSRS GWTQTLTPNN LEELFSNEIP LSPRFSDPAT NVFSPTRKST LLNQFQQQQQ 540 NMLSPINTSI MSPKTADQPL LQASFGVSSP GRMSPRSTEP LSPMGSRFSA FVQREKQHLR 600 SLSSRELGSN VPSSLIGSPV NSLPKWGSPN GKVDWSVGKN ELGQLRRSSS FEIGNNGEEP 660 DLSWVQSLVK ESPPEMLREK SAAPRMGGAA ASGEGLTSTK SQLESTDHSV IGAWLEQMQL 720 DQLVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |