PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948428.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 665aa MW: 73993.5 Da PI: 8.9613

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948428.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	567	616	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_022948428.1 567 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 616 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MVLQKRLDYG FHDYQVPTMP RATRSARKRS ICKKGTEGSQ MRAFDLLATV ADKLLHGTEG 60 PTTNTIDTST EKDRYTVVDK ELNVDSLCKV EPSQGFVSEL VLSGHDKKCE SKDCFPQHNE 120 HVEHSLPLAS EVTNFEMGNL ASEVRVGSPI SKESDNCELD GKSEVIVKYE LLKTEEVLTR 180 TQDRGDDSCK REDPVIWDQK ARVLGNSVSC GKVIHNKQIV QNSYFATQNN VKVVDRDDDE 240 NSSGCTHPVS SIKSFRTVPS SRDRRIKKVS ASKSWKVVPR YRDESLSKTD GVWKSLSCCK 300 SSHDSCRPQK SQMNIPFKKR KFFDCSSSVS NSDGGVNSEG ISDSNGKVAK MDSSGRSCSV 360 SGHGHHKSFQ SKDSHVKIRI KSFRVPELFI EIAETATVGS LKRTVMEAVT AILGGGLRVG 420 VLLQGKKVRD DNKTLFQTGI SHDNQLDSLG FALEPNPSRT PLVLCKEDSP CILPCDAPEP 480 LTRYSPDASA DHPGSSNVLP EPHGDSLGNF IESDHDSAPS PTDTSNHKST VDSKALVTVP 540 AMTAEAISVV PMHRKSKRSE VAQRRIRRPF SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN 600 AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV LTAHAYWSKQ QAKYQLKRQP 660 ERFLL

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MVLQKRLDYG FHDYQVPTMP RATRSARKRS ICKKGTEGSQ MRAFDLLATV ADKLLHGTEG  60
PTTNTIDTST EKDRYTVVDK ELNVDSLCKV EPSQGFVSEL VLSGHDKKCE SKDCFPQHNE  120
HVEHSLPLAS EVTNFEMGNL ASEVRVGSPI SKESDNCELD GKSEVIVKYE LLKTEEVLTR  180
TQDRGDDSCK REDPVIWDQK ARVLGNSVSC GKVIHNKQIV QNSYFATQNN VKVVDRDDDE  240
NSSGCTHPVS SIKSFRTVPS SRDRRIKKVS ASKSWKVVPR YRDESLSKTD GVWKSLSCCK  300
SSHDSCRPQK SQMNIPFKKR KFFDCSSSVS NSDGGVNSEG ISDSNGKVAK MDSSGRSCSV  360
SGHGHHKSFQ SKDSHVKIRI KSFRVPELFI EIAETATVGS LKRTVMEAVT AILGGGLRVG  420
VLLQGKKVRD DNKTLFQTGI SHDNQLDSLG FALEPNPSRT PLVLCKEDSP CILPCDAPEP  480
LTRYSPDASA DHPGSSNVLP EPHGDSLGNF IESDHDSAPS PTDTSNHKST VDSKALVTVP  540
AMTAEAISVV PMHRKSKRSE VAQRRIRRPF SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN  600
AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV LTAHAYWSKQ QAKYQLKRQP  660
ERFLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-124	MYB_related family protein