PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022948427.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 659aa    MW: 75226.6 Da    PI: 6.5166
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022948427.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.82.7e-1152896563373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+avs+ d++ a++lL++++++++p+gd +qRla +f+++L++rla  ++ ly  ++++ets    ++ l+ +++f +++P+ ++s++ 
  XP_022948427.1 289 TLLIQCAQAVSNYDQRTANELLNQIRHHSNPSGDGNQRLAYFFAKGLETRLAA-GTPLYMPFASNETS---AADILKTYQMFIKACPFRRMSYFY 379
                     69**************************************************9.99999888888877...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++Il+ +e+ +r+Hi+Df+i +GlQWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++e+tg+rLa+++++++vpfe +v +a+++e+++
  XP_022948427.1 380 ANRTILKLAENVTRLHIVDFGILYGLQWPCLIQRLSDRPGGPPKLRITGIELPQPGfrPAERVEQTGRRLAHYCKRFNVPFEHKV-LAQKWETVK 473
                     *******************************************************9****************************9.6******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+v+++E ++V +++++++++de+v  +s+rd+vLkl+++++P+++++   + + n++ F +rf eal yys+lfd++ea++pr++ +r   
  XP_022948427.1 474 YEDLNVNRDELTIVTCMFRMKNVPDETVVANSPRDKVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRYLC 568
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     Ere+lgr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++  k+++ ++++ + + + v+++ +++++gWk+r +  +S+W
  XP_022948427.1 569 EREILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKNVEKIVNTEYHQDFAVDQDGAWMLQGWKGRIIDGLSCW 656
                     **********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    
MDNLLDDFPN SWNNFHYNPH LSNGFFNVNR EIFDPLHHNS SSSSSSTSPS LSPSSTEGNS  60
PDCHDTSNTM LKYITEMLMD EEEDLKTKPC MLIDCLALQA AEKSFYDVLG KKYPPSPIGL  120
GDSTQNFRSD LGFFKAEDES ESFNGDSSVF PPSDKPLLSQ DSLFGMQYIF HFRQGAVEAS  180
KFLPVNGKFG TIDLDNDSSA SVPSRAVDFS WLAAVGDARS TLQNGLFREK KNHQREDSDE  240
EGESRQSPSW GSDGSSENES SKKSRKKTKG KKNRSRKQES CVEVVDLWTL LIQCAQAVSN  300
YDQRTANELL NQIRHHSNPS GDGNQRLAYF FAKGLETRLA AGTPLYMPFA SNETSAADIL  360
KTYQMFIKAC PFRRMSYFYA NRTILKLAEN VTRLHIVDFG ILYGLQWPCL IQRLSDRPGG  420
PPKLRITGIE LPQPGFRPAE RVEQTGRRLA HYCKRFNVPF EHKVLAQKWE TVKYEDLNVN  480
RDELTIVTCM FRMKNVPDET VVANSPRDKV LKLIRKINPD LFIHEVTNGS FNTPFFNTRF  540
KEALFYYSSL FDMYEATVPR DNPQRYLCER EILGRDIMNV IACEGLERVE RPETYKQWQV  600
RNTRAGFKQV PLDQELLKNV EKIVNTEYHQ DFAVDQDGAW MLQGWKGRII DGLSCWVVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265278RKKTKGKKNRSRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-169GRAS family protein