PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022948319.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 549aa    MW: 59429.4 Da    PI: 4.4427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022948319.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.41.8e-1221795381373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++Ll+cAeav+ ++l+la++lL++++ l+  +g +m+++a yf++AL +++++        l+p++  e+ ss +   +  f+  +P++kf+h
  XP_022948319.1 179 LVHTLLACAEAVDINNLNLADTLLKHIRILVEAQGGAMRKVAGYFAQALTHHIYG--------LHPQKLFEYASSYTDLLQMNFYVSCPYMKFAH 265
                     689****************************************************........66666655555555555556************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taNqaIle+v ++ +vH++Df+++qGlQWpaL+qaLa Rp+gpp + +Tg+g+p  + s++ l+e+g +La+fA+++gv+fef+   +++l++l
  XP_022948319.1 266 FTANQAILESVGTAATVHVVDFSLQQGLQWPALIQALALRPGGPPAFYLTGIGPPPGEnSTDGLQEVGLKLAQFADTIGVEFEFRGSFCNDLAEL 360
                     ******************************************************88778***************************99******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +++ L+++  E+++Vn+v++lhrll++++++e+    vL+++k+l+Pk+v+vveq adhn++sF  rf+eal+yys+lfdsle +l  + ee++ 
  XP_022948319.1 361 DPSILNLE-SETVIVNSVFELHRLLAHPGAIEK----VLRTIKELNPKIVTVVEQVADHNGPSFTGRFTEALHYYSSLFDSLEGSL--AGEEDVA 448
                     *****885.7***********************....************************************************8..5577788 PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++e+lgr+i nvva eg++r+erhetl++W++rl+++GF+ v+l+++a kqa++ll+ ++ ++gyrvee++gsl+lgW++rpL+++SaW
  XP_022948319.1 449 GSEEYLGRQILNVVAGEGSDRVERHETLAQWQSRLGSSGFEMVHLGSNAFKQASTLLALFGgGNGYRVEENNGSLTLGWHTRPLIATSAW 538
                     88889************************************************************************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MKRDHSYQSP NPAAGKAKIW PEKEDDDDDD ELLAALGYNV RLSDMADVAL KLEQLEMVMG  60
LSEEDGISHL SSNTVHYNPS DVSSWVQSML AELNTDDSVF AEAESTSAVA AFADDSEYDL  120
RAIPGVAVFP QIDSNTPRKR FKKSESESVL VTASSSSSSS SEPSRTVVLA DSTDTGVYLV  180
HTLLACAEAV DINNLNLADT LLKHIRILVE AQGGAMRKVA GYFAQALTHH IYGLHPQKLF  240
EYASSYTDLL QMNFYVSCPY MKFAHFTANQ AILESVGTAA TVHVVDFSLQ QGLQWPALIQ  300
ALALRPGGPP AFYLTGIGPP PGENSTDGLQ EVGLKLAQFA DTIGVEFEFR GSFCNDLAEL  360
DPSILNLESE TVIVNSVFEL HRLLAHPGAI EKVLRTIKEL NPKIVTVVEQ VADHNGPSFT  420
GRFTEALHYY SSLFDSLEGS LAGEEDVAGS EEYLGRQILN VVAGEGSDRV ERHETLAQWQ  480
SRLGSSGFEM VHLGSNAFKQ ASTLLALFGG GNGYRVEENN GSLTLGWHTR PLIATSAWAV  540
ASCTGGESS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0GRAS family protein