PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022947720.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 479aa    MW: 54377.2 Da    PI: 5.7765
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022947720.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3167.9e-97924633374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +l+++ A a+ +++++++q+l++ l+el sp+gd  q+la+yf++A+ +++++s++++y++l++ +++++  ++   ++  f+evsP+++f+h++
  XP_022947720.1  92 TLIVQTAIAIVDNNASRIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGERCYRTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVA 186
                     578999********************************************************9999886665555555556************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlel 191
                      N  I+ea+ege+++HiiD++ s ++QWp++l+aLasR++++p+lR+T++++ + ++k+ ++e+ +r++kfA+ +gvpf+f++++ + ++++l++
  XP_022947720.1 187 SNGVIMEAFEGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLTTLVA-ARSDKKVMREISRRIEKFARLMGVPFKFKAIYYSgDISQLNF 280
                     ***************************************************9.55799**************************7777******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                      eL v+ +Eala+n+v +  ++     ++e++rd +++ +  l+P++++vve+ ad+  ++ +F++ + e+l+++ + fdsl+ ++p++s+e+ +
  XP_022947720.1 281 TELGVNDDEALAINCVGAFRSVT----PVENRRDFLISRFGALRPRIITVVEEQADLdsDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLM 371
                     *****************998886....999999*********************999434559******************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaWr 374
                     +Er+  gr+iv+++a + ae +er+et+++W +rl+e GFkpv++se++++++++llr++  dg++v ++    ++ ++l Wk++++v++ aW+
  XP_022947720.1 372 LERA-AGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRRYR-DGWTVLDDgedaDAGIFLAWKGQAVVWAAAWT 463
                     ****.********************************************************.99999844444478888**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MDTLFRLVSN LHQPSDQSYN SSTSSKNSVD LQNHCFLIPS PPEQCFTSSF MVDQQHFSAS  60
SSSNHRPDND HVHQDHEYIN VNLEFSNGWA STLIVQTAIA IVDNNASRIQ QLMWMLNELG  120
SPYGDIDQKL AFYFLRAMFS HVTNSGERCY RTLAMVSEKR SCFASMRRMV LKFQEVSPWM  180
TFGHVASNGV IMEAFEGEKK LHIIDISNSF CTQWPTFLEA LASRSDETPH LRLTTLVAAR  240
SDKKVMREIS RRIEKFARLM GVPFKFKAIY YSGDISQLNF TELGVNDDEA LAINCVGAFR  300
SVTPVENRRD FLISRFGALR PRIITVVEEQ ADLDSDGVDF VKDVQECLRW FRVYFDSLDG  360
SFPSTSDEKL MLERAAGRAI VDLLARAPAE CVERRETAAR WARRLHEGGF KPVSFSEDVN  420
DDVRALLRRY RDGWTVLDDG EDADAGIFLA WKGQAVVWAA AWTPEPLDGE KSRQSSSSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-147GRAS family protein