PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022947719.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 492aa    MW: 55867.9 Da    PI: 5.6281
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022947719.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.98.7e-971054763374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +l+++ A a+ +++++++q+l++ l+el sp+gd  q+la+yf++A+ +++++s++++y++l++ +++++  ++   ++  f+evsP+++f+h++
  XP_022947719.1 105 TLIVQTAIAIVDNNASRIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGERCYRTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVA 199
                     578999********************************************************9999886665555555556************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlel 191
                      N  I+ea+ege+++HiiD++ s ++QWp++l+aLasR++++p+lR+T++++ + ++k+ ++e+ +r++kfA+ +gvpf+f++++ + ++++l++
  XP_022947719.1 200 SNGVIMEAFEGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLTTLVA-ARSDKKVMREISRRIEKFARLMGVPFKFKAIYYSgDISQLNF 293
                     ***************************************************9.55799**************************7777******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                      eL v+ +Eala+n+v +  ++     ++e++rd +++ +  l+P++++vve+ ad+  ++ +F++ + e+l+++ + fdsl+ ++p++s+e+ +
  XP_022947719.1 294 TELGVNDDEALAINCVGAFRSVT----PVENRRDFLISRFGALRPRIITVVEEQADLdsDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLM 384
                     *****************998886....999999*********************999434559******************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaWr 374
                     +Er+  gr+iv+++a + ae +er+et+++W +rl+e GFkpv++se++++++++llr++  dg++v ++    ++ ++l Wk++++v++ aW+
  XP_022947719.1 385 LERA-AGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRRYR-DGWTVLDDgedaDAGIFLAWKGQAVVWAAAWT 476
                     ****.********************************************************.99999844444478888**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MDTLFRLVSN LHQPSDQSYN SSTSSKNSVD LQNHCFLIPS PPEQCFTSSF MVDQQHFSAS  60
SSSNHRPDND HVHQDHEYIS TINSTDRWFA PLDVNLEFSN GWASTLIVQT AIAIVDNNAS  120
RIQQLMWMLN ELGSPYGDID QKLAFYFLRA MFSHVTNSGE RCYRTLAMVS EKRSCFASMR  180
RMVLKFQEVS PWMTFGHVAS NGVIMEAFEG EKKLHIIDIS NSFCTQWPTF LEALASRSDE  240
TPHLRLTTLV AARSDKKVMR EISRRIEKFA RLMGVPFKFK AIYYSGDISQ LNFTELGVND  300
DEALAINCVG AFRSVTPVEN RRDFLISRFG ALRPRIITVV EEQADLDSDG VDFVKDVQEC  360
LRWFRVYFDS LDGSFPSTSD EKLMLERAAG RAIVDLLARA PAECVERRET AARWARRLHE  420
GGFKPVSFSE DVNDDVRALL RRYRDGWTVL DDGEDADAGI FLAWKGQAVV WAAAWTPEPL  480
DGEKSRQSSS SH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-147GRAS family protein