PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944049.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 669aa MW: 73339.5 Da PI: 5.8262

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944049.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.7e-07	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg XP_022944049.1 274 PCPEFRK-GTCRQGDACEYAHG 294 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MCCNSKSVSP NFVMNGGFKQ GKLGLCLSVL LEFSATDDLI GFRSAVEEHG YDIDEASLWY 60 GRSIGSKKMR YEERTPLMVA AMFGSLNVLS YIVHRGCVDV NRTCGSDGPT ALHCAVAGGS 120 AVSDQVVELL LDASADASAV DANGNRPSDL IGRDFSLASY SRRKVLQQLL NGWVEDGLGS 180 SEAIFYEMET LEPVEASSSW AARDGMEKKE YPVDLSLPDI KNEMYSTDEF RMYTFKIKPC 240 TRAYSHDWTE CPFVHPGENA RRRDLRKYHY SCVPCPEFRK GTCRQGDACE YAHGIFECWL 300 HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPLYASTGSA VPSPRSICGS SLDMASISSL 360 TLGSPSALMP SSSTPPLTPT GVSSPMGGTM WQTQPPTLQL PGSRLKASLS ARDVDLDVEL 420 LCLESQRRRQ KQLIEEISCL PSPSRWNNGL STTASFPSPR SSRNGELNGL GGMKPTNLEE 480 FFGSVDPAML PQLQGLSLDS MGTQVQSPSG IQMRQSLNRS FLSSYANSIG SPPARSSQPS 540 VSSAANVLGP RGALFTNRSQ SFIEQNAMPS NLSDWGSPNG KLDWGIHGEE LNKLRKSASY 600 GFQGSSLATP TMHATAPEPD VSWVQSLVKD TPSENSVQLS MDEQQKQQLW HLDNSDLKQM 660 YMEQEQLVA

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MCCNSKSVSP NFVMNGGFKQ GKLGLCLSVL LEFSATDDLI GFRSAVEEHG YDIDEASLWY  60
GRSIGSKKMR YEERTPLMVA AMFGSLNVLS YIVHRGCVDV NRTCGSDGPT ALHCAVAGGS  120
AVSDQVVELL LDASADASAV DANGNRPSDL IGRDFSLASY SRRKVLQQLL NGWVEDGLGS  180
SEAIFYEMET LEPVEASSSW AARDGMEKKE YPVDLSLPDI KNEMYSTDEF RMYTFKIKPC  240
TRAYSHDWTE CPFVHPGENA RRRDLRKYHY SCVPCPEFRK GTCRQGDACE YAHGIFECWL  300
HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPLYASTGSA VPSPRSICGS SLDMASISSL  360
TLGSPSALMP SSSTPPLTPT GVSSPMGGTM WQTQPPTLQL PGSRLKASLS ARDVDLDVEL  420
LCLESQRRRQ KQLIEEISCL PSPSRWNNGL STTASFPSPR SSRNGELNGL GGMKPTNLEE  480
FFGSVDPAML PQLQGLSLDS MGTQVQSPSG IQMRQSLNRS FLSSYANSIG SPPARSSQPS  540
VSSAANVLGP RGALFTNRSQ SFIEQNAMPS NLSDWGSPNG KLDWGIHGEE LNKLRKSASY  600
GFQGSSLATP TMHATAPEPD VSWVQSLVKD TPSENSVQLS MDEQQKQQLW HLDNSDLKQM  660
YMEQEQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-176	C3H family protein