PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022943405.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 489aa MW: 53127 Da PI: 7.0794

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022943405.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.4e-17	156	205	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022943405.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205 78*****************......55**********************997 PP
2	AP2	40	9.5e-13	248	297	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ + + XP_022943405.1 248 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAAIQCN 297 89******.7**...5...334336******99*******98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MFDLNLNVDS PDATPNEDSV LFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS 60 TRAGGELFMI NFGILKSGSA NDVVTKELFP IGGTVNPDFG ILQGHNSASS SSNSSRKNWI 120 NLAFDRSGSA GEGRMIQPVQ PQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFILSDYEED LKQMKNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKYIYLGLFD SEVEAARAYD KAAIQCNGRE 300 AVTNFEPSTY GERVSEGSSE GCRIMLDLNL GISPLSIDNR PKDNEGHLRF QSGPCYANDM 360 STMIESNADA AVSDPSLKGP VMASGHVPLW NGLQQSCLLP SEERVTDKRH ALGSSQGVVP 420 NWAWQIHNQG NATQLPLFSA AASSGFSFSA IPAAILPPCQ PGSTAHNLHF TSAKASPNSP 480 QLNPQQPPP

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MFDLNLNVDS PDATPNEDSV LFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS  60
TRAGGELFMI NFGILKSGSA NDVVTKELFP IGGTVNPDFG ILQGHNSASS SSNSSRKNWI  120
NLAFDRSGSA GEGRMIQPVQ PQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFILSDYEED LKQMKNLSKE EFVHILRRQS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKYIYLGLFD SEVEAARAYD KAAIQCNGRE  300
AVTNFEPSTY GERVSEGSSE GCRIMLDLNL GISPLSIDNR PKDNEGHLRF QSGPCYANDM  360
STMIESNADA AVSDPSLKGP VMASGHVPLW NGLQQSCLLP SEERVTDKRH ALGSSQGVVP  420
NWAWQIHNQG NATQLPLFSA AASSGFSFSA IPAAILPPCQ PGSTAHNLHF TSAKASPNSP  480
QLNPQQPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-134	AP2 family protein