PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022943234.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 315aa    MW: 35879.5 Da    PI: 7.049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022943234.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-121257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46
                     +g+W+ eEde l ++v+++G+++W++  r  g + Rt+k+c++rw +
   XP_022943234.1 12 KGPWSVEEDEVLMNYVNKFGPRDWSS-LRSKGlLPRTGKSCRLRWVN 57
                     79************************.66667788**********87 PP
2Myb_DNA-binding43.47.9e-1468109346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r++++E+   +++ +q+G++ W++Ia +++ gRt++++k++w +
   XP_022943234.1  68 RFSADEERVVIELQAQFGNK-WAKIATYLP-GRTDNDVKNFWST 109
                      89******************.*********.***********65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MERKRDGTQM KKGPWSVEED EVLMNYVNKF GPRDWSSLRS KGLLPRTGKS CRLRWVNKLQ  60
PNLKTGCRFS ADEERVVIEL QAQFGNKWAK IATYLPGRTD NDVKNFWSTR RKRLGRILQT  120
PPQKSQKHNQ KISESRRLHH VLPDLEVPTS VSSQLEKRSS TWNDHFENEF ELGNAEMHKM  180
ASLSVQSNMI AMETENQIFG TPSIHMLAPF DPFPHCCISQ ITQSSQGIGM VPDCLGLAPH  240
HIASNLQDGL EPGQTSKIES SLQFMSSSMP KEQDMKAESS LEVENGNPYH ATVVDCFDDF  300
SADLFDFFYQ PPPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-65MYB family protein