PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942664.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 495aa MW: 53240.8 Da PI: 9.0274

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942664.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_022942664.1 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.8	0.00036	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022942664.1 82 WKCDKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK DPKRKVYLCP EPTCVHHHPS 60 RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAQESARH PPSIGRHLYG AQDHPNIISQ SAPGHFTHLL PSSMGSSFRP 180 MSASGFFLTE QNNQSSFHED QPNQSQQGFF GNKGFHGVMQ FPDMQSHTNN CASNVFNLGF 240 IPNSTTDGTT NLNNNNDTNT ISTNLNQFSA ANNGNNEAAA SNIFAVIGDQ MNSAALPSLY 300 SNASAVGGGG GSGIGGLFPH MSATALLQKA AQLGSTTSGS NTTSTLLRSF GSSSNSGGKV 360 SDRTLFPLGY GGVTFGEHES NLQDMMNSFG SGSSGSGMFG SGMNSFGGLE CSSSRTNMET 420 LEDPKLQQDV RGVRMGGTDR LTRDFLGVGQ IVRSMSGGGG GYSQKQGAEG MVLEGNERNS 480 APSSQGFGGG NGNYQ

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK DPKRKVYLCP EPTCVHHHPS  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARH PPSIGRHLYG AQDHPNIISQ SAPGHFTHLL PSSMGSSFRP  180
MSASGFFLTE QNNQSSFHED QPNQSQQGFF GNKGFHGVMQ FPDMQSHTNN CASNVFNLGF  240
IPNSTTDGTT NLNNNNDTNT ISTNLNQFSA ANNGNNEAAA SNIFAVIGDQ MNSAALPSLY  300
SNASAVGGGG GSGIGGLFPH MSATALLQKA AQLGSTTSGS NTTSTLLRSF GSSSNSGGKV  360
SDRTLFPLGY GGVTFGEHES NLQDMMNSFG SGSSGSGMFG SGMNSFGGLE CSSSRTNMET  420
LEDPKLQQDV RGVRMGGTDR LTRDFLGVGQ IVRSMSGGGG GYSQKQGAEG MVLEGNERNS  480
APSSQGFGGG NGNYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-101	C2H2 family protein