PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022940317.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 937aa    MW: 103133 Da    PI: 5.2048
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022940317.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.7e-25149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_022940317.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+v+v+r+
  XP_022940317.1 240 KSQLLVGVRRA 250
                     7778*****97 PP
2Auxin_resp113.52e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_022940317.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*********************************99*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    
MGSVDEKLKT IGGFISNAPQ PNLLDDMKLL KEMQDQTGAR KAINSELWHA CAGPLVSLPH  60
MGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVHNVTLHAD KDSDEIYAQM  120
SLQPVNSEKD VFIVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLLVGVRRA NRQQSTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWDIET PESLFIFPSL TSGLKRPLHG GFLAGETDWG SLVKRPMLRV  420
PENVSYAPTL CSEPLMKMLL RPQLVNLHGT TLQQDMMGGM QPVTNPKMQQ QQVTSSSPQH  480
QNHHQPAPSP STDPIISNSS PKANEPGKVQ DSAAIESEAP TGAEADKSKY EREVSTCQSN  540
PLPPVECGED KLTGNEVNMQ TLVNQLSFVN QNQIPMQLQS VSSWPMQPQL ESLIQHPQPI  600
DTPQPEFPNS NGLISSMDGD GCLINPTCLP LSGVMRSPGN LSMLGLQESS TVFSEALNFP  660
IPSTGQEMWD PLSNIRFSSQ TNHLVSFSHP DASNLICMAN ANVTRDVSDE SNNQSGIYGC  720
SNLEISNGGN TLVDPAVSST ILDDYCTLKD ADFPHPSDCL AGNFSSSQDV QSQITSASLG  780
DSQAFSRQEF HDNSGGTSSC NVDFDEGNLL QNGSWKQVVP PMRTYTKVQK AGSVGRSIDV  840
TSFKNYEELC SAIECMFGLE GLLNDPRGSG WKLVYVDYEN DVLLIGDDPW EEFVSCVRCI  900
RILSPSEVQQ MSEEGMKLLN SAMMQGMNCS ISEGGRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein