PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022939195.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 580aa    MW: 64537.9 Da    PI: 4.8914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022939195.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4517.6e-1382125711374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L+ cAeav++++l+la+al++r+  la +++ +m+++a++f+eALa+r++r        l p++  ++++ + l+    f+e +P+lkf+h
  XP_022939195.1 212 LVHALMVCAEAVQQNNLNLAEALVKRIDYLAVSQAGAMRKVATFFAEALARRIYR--------LCPENPLDRSVLDMLQ--MHFYESCPYLKFAH 296
                     689****************************************************........3333333333444444..35************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p++++++ l+ +g++LakfAe+l+v+fe++ +va++l+dl+
  XP_022939195.1 297 FTANQAILEAFEGKKRVHVIDFSMNQGMQWPALIQALALRPSGPPTFRLTGIGPPAPDNSDYLQDVGWKLAKFAETLHVEFEYRGFVANSLADLD 391
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++L+++p   E+++Vn+v++lh+ll++++++e+    vL++vk+++P++v+vveqea+hn++ F+erf+e+l+yys+lfdsle +    +++++
  XP_022939195.1 392 ASMLELRPseVESVVVNSVFELHQLLARPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECS---PNNQDK 479
                     ********88899*********************....**********************************************99...689999 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++lg++i+nvvacega+r+erhetl +Wr rl++aGF p++l+++a kqa+ ll+ ++ ++gyrvee++gsl+lgW++rpL+++SaW+
  XP_022939195.1 480 MMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLTSAGFDPIHLGSNAFKQASILLALFGsGEGYRVEENEGSLMLGWHTRPLIATSAWK 571
                     999****************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    
MKREHHYLHP RPEPPSVATG SNRESYLNTG KAKLWEEEVQ LDGGMDELLA VLGYKVKSSD  60
MAEVAQKLEQ LEEAMCQVQD TGLSHLAFDT VHYNPSDLST WVESMLTELH PPPPTSHLDD  120
SSFLAPAESS TIANIDYEPQ LQTSSRIFEE SSSSDYDLKA ITDSAIYSPR ESKRLKASES  180
DTDVFSTSAI GASNSATRPV ILVDSQENGI QLVHALMVCA EAVQQNNLNL AEALVKRIDY  240
LAVSQAGAMR KVATFFAEAL ARRIYRLCPE NPLDRSVLDM LQMHFYESCP YLKFAHFTAN  300
QAILEAFEGK KRVHVIDFSM NQGMQWPALI QALALRPSGP PTFRLTGIGP PAPDNSDYLQ  360
DVGWKLAKFA ETLHVEFEYR GFVANSLADL DASMLELRPS EVESVVVNSV FELHQLLARP  420
GAIEKVLSVV KQMKPEIVTV VEQEANHNGP VFVERFTESL HYYSTLFDSL ECSPNNQDKM  480
MSEMYLGKQI CNVVACEGAD RVERHETLTQ WRTRLTSAGF DPIHLGSNAF KQASILLALF  540
GSGEGYRVEE NEGSLMLGWH TRPLIATSAW KPGNNPVVAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein