PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022939062.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 597aa    MW: 65022.2 Da    PI: 4.738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022939062.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.44.6e-1372245901374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++Ll+cAeav++++++la+al++++  la++++ +m+++a+yf++ALa+r+++    +y+      +s    s+ l++   f+e++P+lkf+h
  XP_022939062.1 224 LVHALLACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYG----IYSPQDGLYSS---YSDPLQM--HFYETCPYLKFAH 309
                     689***************************************************9....77544333333...5566555..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taNqaIlea++++ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+++p+++  +++l+++g++La++Ae++gv+fefn +v+++ledl
  XP_022939062.1 310 FTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGISPPQPDnTADSLQQVGWKLAQMAEAIGVEFEFNHIVCSNLEDL 404
                     **********************************************************999********************************** PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.e 280
                     ++ +L+++p   Ea+aVn+v+ lhrll++++++e+    vL l+k+++Pk+v++veqea+hn++ Fl+rf+eal+yys lfdsl  ++++ e  +
  XP_022939062.1 405 DPAALKIRPtaVEAVAVNSVFDLHRLLARPGAIEK----VLGLIKTTQPKIVTIVEQEANHNGPIFLDRFTEALHYYSNLFDSLeGSSIGFEPaN 495
                     *********999***********************....*********************************************65666655459 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e++ +++++lgr+i+nvvaceg++r+erhe+l +Wr r+e+aGF pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  XP_022939062.1 496 EDVLLSEVYLGRQICNVVACEGTDRVERHESLTQWRTRIESAGFDPVHLGSNAFKQASMLLALFAgGEGYRVEENNGCLMLGWHTRPLIATSAWQ 590
                     **********************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    
MKRELEEDRS TADAGRRVVK GECSSVSGGK LKMWEEEEEQ DANGGGGGMD ELLAVLGYKV  60
RASDMADVAM KMEQLEMVMG TAQEDGISHL ASDTVHYNPS DLSAWVQNML SEFNNSTNPN  120
PQSSLYSDSL HRIQSTTSCL YDDDSEYDLS AIPGVALLPP KDSSTEIETH SRKRLKIGGE  180
SSGHLSPSPS SSSPPFVTTA GIVSEPSRPV VVVGEDSQET GIQLVHALLA CAEAVQQENM  240
KLADALVKHI GFLAASQAGA MRKVATYFAQ ALARRIYGIY SPQDGLYSSY SDPLQMHFYE  300
TCPYLKFAHF TANQAILEAF ATAARVHVID FSLNQGMQWP ALMQALALRP GGPPAFRLTG  360
ISPPQPDNTA DSLQQVGWKL AQMAEAIGVE FEFNHIVCSN LEDLDPAALK IRPTAVEAVA  420
VNSVFDLHRL LARPGAIEKV LGLIKTTQPK IVTIVEQEAN HNGPIFLDRF TEALHYYSNL  480
FDSLEGSSIG FEPANEDVLL SEVYLGRQIC NVVACEGTDR VERHESLTQW RTRIESAGFD  540
PVHLGSNAFK QASMLLALFA GGEGYRVEEN NGCLMLGWHT RPLIATSAWQ LAPNGSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein