PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938951.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ERF

Protein Properties

Length: 418aa MW: 47058.1 Da PI: 4.7196

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938951.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.7e-19	69	120	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a++ ++ge XP_022938951.1 69 CKYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTATEAALAYDEAARTMYGE 120 79***999.******8...3.35**********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MTPETIERKR KSRSRRDRST VAETLAKWKA YNECADSCND EDKPIRKAPA KGSKKGCMKG 60 KGGPLNSQCK YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTATEAALAY DEAARTMYGE 120 TARLNLPNIK NRGQLQGILL EDYLGLRNSD SSTATSTCSG STITTSNQSE VCVPGEFALW 180 PPSNIKIEDG EGESRTWDHS SHAPTPMCLE KPVKHEDVAK YLEHHNNQTV LPDTELPSWD 240 QLQNFQMDVM FEPRIGDQAD DTAKPMSMEK KQVKNEDNDA KHLDQRNDQT VSSGTEIPGV 300 DDLQNFQMDE MFDVDELLGL INGDCLYDPS ILQGNVDGFN STAPSQVRDH GSEKASSLSY 360 QFQNPDAKLL GSLQHMEQSP SDVDYRFDFL KQGREEDVNA AADEYIRYLN YEMDDMGF

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MTPETIERKR KSRSRRDRST VAETLAKWKA YNECADSCND EDKPIRKAPA KGSKKGCMKG  60
KGGPLNSQCK YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTATEAALAY DEAARTMYGE  120
TARLNLPNIK NRGQLQGILL EDYLGLRNSD SSTATSTCSG STITTSNQSE VCVPGEFALW  180
PPSNIKIEDG EGESRTWDHS SHAPTPMCLE KPVKHEDVAK YLEHHNNQTV LPDTELPSWD  240
QLQNFQMDVM FEPRIGDQAD DTAKPMSMEK KQVKNEDNDA KHLDQRNDQT VSSGTEIPGV  300
DDLQNFQMDE MFDVDELLGL INGDCLYDPS ILQGNVDGFN STAPSQVRDH GSEKASSLSY  360
QFQNPDAKLL GSLQHMEQSP SDVDYRFDFL KQGREEDVNA AADEYIRYLN YEMDDMGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	17	RKSRSRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40350.1	4e-30	ERF family protein