PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938950.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ERF

Protein Properties

Length: 429aa MW: 48150.3 Da PI: 4.7139

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938950.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.8e-19	80	131	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a++ ++ge XP_022938950.1 80 CKYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTATEAALAYDEAARTMYGE 131 79***999.******8...3.35**********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MGLSDQYSDA ISLPTNSIRK RKSRSRRDRS TVAETLAKWK AYNECADSCN DEDKPIRKAP 60 AKGSKKGCMK GKGGPLNSQC KYRGVRQRTW GKWVAEIREP NRGSRLWLGT FPTATEAALA 120 YDEAARTMYG ETARLNLPNI KNRGQLQGIL LEDYLGLRNS DSSTATSTCS GSTITTSNQS 180 EVCVPGEFAL WPPSNIKIED GEGESRTWDH SSHAPTPMCL EKPVKHEDVA KYLEHHNNQT 240 VLPDTELPSW DQLQNFQMDV MFEPRIGDQA DDTAKPMSME KKQVKNEDND AKHLDQRNDQ 300 TVSSGTEIPG VDDLQNFQMD EMFDVDELLG LINGDCLYDP SILQGNVDGF NSTAPSQVRD 360 HGSEKASSLS YQFQNPDAKL LGSLQHMEQS PSDVDYRFDF LKQGREEDVN AAADEYIRYL 420 NYEMDDMGF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MGLSDQYSDA ISLPTNSIRK RKSRSRRDRS TVAETLAKWK AYNECADSCN DEDKPIRKAP  60
AKGSKKGCMK GKGGPLNSQC KYRGVRQRTW GKWVAEIREP NRGSRLWLGT FPTATEAALA  120
YDEAARTMYG ETARLNLPNI KNRGQLQGIL LEDYLGLRNS DSSTATSTCS GSTITTSNQS  180
EVCVPGEFAL WPPSNIKIED GEGESRTWDH SSHAPTPMCL EKPVKHEDVA KYLEHHNNQT  240
VLPDTELPSW DQLQNFQMDV MFEPRIGDQA DDTAKPMSME KKQVKNEDND AKHLDQRNDQ  300
TVSSGTEIPG VDDLQNFQMD EMFDVDELLG LINGDCLYDP SILQGNVDGF NSTAPSQVRD  360
HGSEKASSLS YQFQNPDAKL LGSLQHMEQS PSDVDYRFDF LKQGREEDVN AAADEYIRYL  420
NYEMDDMGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	28	RKSRSRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40350.1	5e-30	ERF family protein