PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022938560.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 476aa    MW: 52504.1 Da    PI: 5.5682
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022938560.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.76.5e-95794612373
            GRAS   2 velLlecAeavss..gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPil 91 
                      +lL+++A+a+    ++ elaq +L rl+el ++++g++++R++ay+++A +  l     +     +p + ++++   +++laa++l++e+sP++
  XP_022938560.1  79 YHLLMAVADAMFGdhKSRELAQVILIRLNELvSTSHGTNLERITAYYAQAFQDLLDCAAVSGGGPNKPHHLHRDDhsPTDVLAAFQLLQEMSPYV 173
                     699******9966225667************777889****************998844444444444444444456899*************** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                     kf+h+taNqaIleav+ ++rvHi+D++i++G+QW++L+qaL sR+++pp  +lRiT++++  s+     +++etg+rL  fA+++g pf+f+   
  XP_022938560.1 174 KFGHFTANQAILEAVADDRRVHIVDYNIMEGIQWASLMQALVSRKDSPPapHLRITAISRGPSSrrWIGTVQETGRRLVAFAASIGQPFSFHQCK 268
                     *********************************************554444********96555567789***********************99 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleak 274
                      ++ e+++++ L++ +gEal+Vn+vl+l ++ + s ++   + ++L   k+l+P++v++ve+e++h+ +   ++  +fl++le ysa++dslea+
  XP_022938560.1 269 LDSDESFRPSGLKLVRGEALVVNCVLHLPHFSNTSPES---IASFLAGAKTLNPRLVTLVEEEIEHGPTidgDYKVQFLDSLERYSAIYDSLEAG 360
                     99*****************************8555544...459**********************744444*********************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegae.rre.rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrp 366
                     +p ++++r  vE+++lg++i+  +   ++  r +   e+   W erle++G+k++++s  + +qa+ll+  ++ dgyrvee  s+ lvlgWk+++
  XP_022938560.1 361 IPMKNRARGLVEKVFLGPRISATLRRIEQPqRAAtAAEENCLWGERLEKMGLKAAAISFANHCQARLLVDLFN-DGYRVEELgSNKLVLGWKSKR 454
                     ***********************9876655144314566667*******************************.******987999********* PP

            GRAS 367 LvsvSaW 373
                     L+svS W
  XP_022938560.1 455 LLSVSIW 461
                     ******* PP
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MAMAVDNAFN GVAVSDYSTS TNNSNDDFHD LFDSIMSIDA LPYSPQVVEI DGGTNCNSPS  60
NPAEGREEEE EEFRSLRLYH LLMAVADAMF GDHKSRELAQ VILIRLNELV STSHGTNLER  120
ITAYYAQAFQ DLLDCAAVSG GGPNKPHHLH RDDHSPTDVL AAFQLLQEMS PYVKFGHFTA  180
NQAILEAVAD DRRVHIVDYN IMEGIQWASL MQALVSRKDS PPAPHLRITA ISRGPSSRRW  240
IGTVQETGRR LVAFAASIGQ PFSFHQCKLD SDESFRPSGL KLVRGEALVV NCVLHLPHFS  300
NTSPESIASF LAGAKTLNPR LVTLVEEEIE HGPTIDGDYK VQFLDSLERY SAIYDSLEAG  360
IPMKNRARGL VEKVFLGPRI SATLRRIEQP QRAATAAEEN CLWGERLEKM GLKAAAISFA  420
NHCQARLLVD LFNDGYRVEE LGSNKLVLGW KSKRLLSVSI WASSSLSSSS SSSDSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-140GRAS family protein