PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022930655.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 534aa    MW: 58317 Da    PI: 5.7483
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022930655.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.74.2e-1271545171374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+ L++cA+ ++ gd+ la +l+ +++ l s       + ++a yf  AL +r++          p  +t +++  e+   ++ ++e++P+lkf
  XP_022930655.1 154 LVHMLVTCADSIHRGDFPLAGSLIVEMQSLLSGINtdCGIGKVAGYFIDALTRRVFT---------PHDTTITTTGYENELLYHHYYEACPYLKF 239
                     689*************************99554431259*****************9.........444444556888889999*********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+s+ +++l+e+g rLa++A++++v+f f+ + a+rled
  XP_022930655.1 240 AHFTANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSSDGRDSLREIGLRLAELARSVNVRFAFRGVSASRLED 334
                     ****************************************************************************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+v+p+E++aVn+++qlhrll ++  ++s+ + vL  ++sl+Pk+v+vveqeadhn++ Fl+rf+eal yys++fdslea        ++
  XP_022930655.1 335 VKPWMLQVNPKETVAVNSIMQLHRLLGNNNRSSSAMEMVLGWIRSLNPKIVTVVEQEADHNQTGFLDRFTEALFYYSTMFDSLEACC---MMPEK 426
                     ***********************************************************************************9995...55566 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + +++l+rei+nvv+ceg +r+erhe l kWr rl++aGF++++l+++a kqa++ll  ++ +g++vee++g+l+lgW++rpL+++SaW+
  XP_022930655.1 427 ALAEMYLQREICNVVSCEGPARVERHEPLVKWRFRLRQAGFRALHLGSNAFKQASMLLTLFSAEGFSVEENEGCLTLGWHSRPLIAASAWQ 517
                     677788************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    
MAPFDSAASS GTSSSGSSSS SSSTVTKPQD IDGLLAGAGY KVRASDLHHV AQRLERLESA  60
MVNSSSEISQ LASGTVHYNP SDIASWVDSI LSELNQTTSL PSDILDFPDL IPGSNQTAGN  120
VSWTDPCVAA QHQNLSHNQL TVVTAMEEDS GIKLVHMLVT CADSIHRGDF PLAGSLIVEM  180
QSLLSGINTD CGIGKVAGYF IDALTRRVFT PHDTTITTTG YENELLYHHY YEACPYLKFA  240
HFTANQAILE AFDGHDCVHV IDFNLMHGLQ WPALIQALAL RPGGPPLLRL TGIGPPSSDG  300
RDSLREIGLR LAELARSVNV RFAFRGVSAS RLEDVKPWML QVNPKETVAV NSIMQLHRLL  360
GNNNRSSSAM EMVLGWIRSL NPKIVTVVEQ EADHNQTGFL DRFTEALFYY STMFDSLEAC  420
CMMPEKALAE MYLQREICNV VSCEGPARVE RHEPLVKWRF RLRQAGFRAL HLGSNAFKQA  480
SMLLTLFSAE GFSVEENEGC LTLGWHSRPL IAASAWQAAP PPDATANHPF GGTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-138GRAS family protein