PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022929398.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 785aa MW: 92208.5 Da PI: 6.8427

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022929398.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.2e-06	231	250	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC+++H XP_022929398.1 231 CPFHLKTGACRFGQRCSRIH 250 *******************9 PP
2	zf-CCCH	25.3	2.7e-08	360	387	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C f++t tC++G C+F+H+ XP_022929398.1 360 WKIAICGEFMKTRyqTCSHGTACNFIHC 387 7889***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MEEPEFVGEE EEKPQGTEAG SIEKPCSLEN LCRKEKRKAL KKIKRKQLRK EEALKKLQEE 60 EARLNDPEEQ RRIRLMELEE EERSERERKL FEERERAWLE AMELNKKKKM AEEEEEEQRR 120 RALEEESTAR QAENENELNE EDGWEYIEGP AEVIWKGDEI ILKKKLIKVP KKGVEPEKSL 180 EDAHRPTSNP LPPQSEDITD CKNAPISTRQ VIDDVASQVP NFGTEQDKSH CPFHLKTGAC 240 RFGQRCSRIH FYPDKSCTLL IKNMYNGPGL AWEQDEGLEF ADEEVECCYE EFYEDVHTEF 300 LKYGEIVNFK VCKNGSFHLR GNLYVHYKSL DSAVLAYNAN NGRFYAGKQV ICEFVNVTRW 360 KIAICGEFMK TRYQTCSHGT ACNFIHCFRN PGGDYEWADS DKPPPRYWVK KMASLFGYLD 420 ESENEKHTEL EHWDKFGKSS RSMSTDVDRY HSRRSKSRSL DHGSRRSKNS ENDYRRHSRR 480 EKVHEKQQSS DKEEYEQANL KYYHRRNNRF NDADSDESAD KFDERSKDRE RGRRSRVRNA 540 DHDDSKNTSN ETDEGWSSGD GNKYRHRHQR RKSNGHVSET FKTTGGSPSQ SAISDRDTRG 600 ISSDRNKERR VSYGGKPKKR WDEVTKDSDD QLKQKSKLKT DYECKKFSLR KSTGLLSDGR 660 QEQSISDRYV ERSEPMNLDK EYCNNEHIDK EGRWDPGRSY DEFEKCSEST SVMHSEAGSP 720 VRQGERFKSD VLGRVDYYGN KVNKRNHREL KSSDSYEQRT SRRKSSRPDD DQNFSDLKYD 780 NTNTN

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MEEPEFVGEE EEKPQGTEAG SIEKPCSLEN LCRKEKRKAL KKIKRKQLRK EEALKKLQEE  60
EARLNDPEEQ RRIRLMELEE EERSERERKL FEERERAWLE AMELNKKKKM AEEEEEEQRR  120
RALEEESTAR QAENENELNE EDGWEYIEGP AEVIWKGDEI ILKKKLIKVP KKGVEPEKSL  180
EDAHRPTSNP LPPQSEDITD CKNAPISTRQ VIDDVASQVP NFGTEQDKSH CPFHLKTGAC  240
RFGQRCSRIH FYPDKSCTLL IKNMYNGPGL AWEQDEGLEF ADEEVECCYE EFYEDVHTEF  300
LKYGEIVNFK VCKNGSFHLR GNLYVHYKSL DSAVLAYNAN NGRFYAGKQV ICEFVNVTRW  360
KIAICGEFMK TRYQTCSHGT ACNFIHCFRN PGGDYEWADS DKPPPRYWVK KMASLFGYLD  420
ESENEKHTEL EHWDKFGKSS RSMSTDVDRY HSRRSKSRSL DHGSRRSKNS ENDYRRHSRR  480
EKVHEKQQSS DKEEYEQANL KYYHRRNNRF NDADSDESAD KFDERSKDRE RGRRSRVRNA  540
DHDDSKNTSN ETDEGWSSGD GNKYRHRHQR RKSNGHVSET FKTTGGSPSQ SAISDRDTRG  600
ISSDRNKERR VSYGGKPKKR WDEVTKDSDD QLKQKSKLKT DYECKKFSLR KSTGLLSDGR  660
QEQSISDRYV ERSEPMNLDK EYCNNEHIDK EGRWDPGRSY DEFEKCSEST SVMHSEAGSP  720
VRQGERFKSD VLGRVDYYGN KVNKRNHREL KSSDSYEQRT SRRKSSRPDD DQNFSDLKYD  780
NTNTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-131	C3H family protein