PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022929280.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRAS

Protein Properties

Length: 957aa MW: 106166 Da PI: 6.4363

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022929280.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	354.8	1.3e-108	584	957	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++Ll+cA+ +s + +a ++L+r+s+ ++gdp++R+a++f eAL++rl+ + +k + ++++ + ns++ l ++k++++++P+ kf+hl XP_022929280.1 584 LKVLLDCARLCDS-EPDRAVKTLNRISKSLREHGDPVERVAFHFGEALRSRLSP---TAMKNCLVTNDGDANSEDFLLSYKALNDACPYSKFAHL 674 679****8877.7889999****************************9...556666666666789******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 taNqaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g + +l +tg+rL++fA+ l+++fef++ + + +ed XP_022929280.1 675 TANQAILEATQTASKIHIVDFGIAQGVQWAALLQALATRATGKPiKVRISGIPAPSLGdsPAASLCATGNRLSEFAKLLELNFEFEP-ILTPIED 768 ************************************88887******999889999*******************.799 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l+ +++rv+++E+laVn++lql++llde ++ + + L l kslsPk++++ e ea++n+ +F +rf +al++ysa+f+sle +lpr+s er+ XP_022929280.1 769 LNESSFRVQSDEVLAVNFMLQLYNLLDEVPTVVH---NALLLAKSLSPKILTLGEYEASLNRVEFYNRFKNALKFYSAIFESLEPNLPRDSPERH 860 **********************99888888...999*************************************************** PP GRAS 284 kvErellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSa 372 +E++llgr+i vv e+++ rr r+e +e+W++ le++GFkpv+ls++a +qak ll +++ s y++ e+ +++ l W+d pL++vS+ XP_022929280.1 861 QLEKQLLGRRIAGVVGSEEESgskrRRVRMEAKEQWKNLLESSGFKPVALSHYAISQAKILLWNYNySSLYTLIESTPEFLsLAWNDVPLLTVSS 955 ***********9987543334899**********************************999999999999*********** PP GRAS 373 Wr 374 Wr XP_022929280.1 956 WR 957 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence
MSRFGLKTLE MSSIATRHIR RLSTAATATA TATAAAKATA TTSSSISISK AKSKLRTEYD 60 PDKALNIYSS VSSHYTSPVS SRYAQELTIR RLAKSRRFDD IESLIESHKN DPKITQEPFL 120 STLIRSYGQA GMFEHAMRTY NQMEDFGTPR SVISFNALLC AFNHSKQFDK VPQLFDEIPK 180 KYNFSPNKIS YGILVKSYCE SGSPEKAMQI VREMEENDVE VTAVTFTTIL DALYKKGESE 240 EAEKIWNKMI SKGCELDVGA YNVRLMHEHG GKPEHVEALI EEMANSGMKP DTISYNYLMT 300 CYCKNGMIDE AKKVYDDMEI NGCNKNAATF RTFMYYLCRN GDYEKGYMVF KESVKVHKIP 360 DVNTVKYLVE GLMEKKKMKE AKGLIRTIRK KFPPDSLKTW RKVEEALGLA SSSASSSSSS 420 PAFTFGISGS AFSDPFQVAG AADSTDQPFH FSNLEHPSTG FRFFPNFGGG GGGEFESDEW 480 MDSLVGGRDS TDSSDLPSGC DDYGEFGLYG ADPFNGSPPS LFYRELLPEG SYKTNSVLPP 540 LPSSPPPVKD AEVANSMAGS LQKNNVVESS SSAPEIDSSS PPLLKVLLDC ARLCDSEPDR 600 AVKTLNRISK SLREHGDPVE RVAFHFGEAL RSRLSPTAMK NCLVTNDGDA NSEDFLLSYK 660 ALNDACPYSK FAHLTANQAI LEATQTASKI HIVDFGIAQG VQWAALLQAL ATRATGKPIK 720 VRISGIPAPS LGDSPAASLC ATGNRLSEFA KLLELNFEFE PILTPIEDLN ESSFRVQSDE 780 VLAVNFMLQL YNLLDEVPTV VHNALLLAKS LSPKILTLGE YEASLNRVEF YNRFKNALKF 840 YSAIFESLEP NLPRDSPERH QLEKQLLGRR IAGVVGSEEE SGSKRRRVRM EAKEQWKNLL 900 ESSGFKPVAL SHYAISQAKI LLWNYNYSSL YTLIESTPEF LSLAWNDVPL LTVSSWR

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence

MSRFGLKTLE MSSIATRHIR RLSTAATATA TATAAAKATA TTSSSISISK AKSKLRTEYD  60
PDKALNIYSS VSSHYTSPVS SRYAQELTIR RLAKSRRFDD IESLIESHKN DPKITQEPFL  120
STLIRSYGQA GMFEHAMRTY NQMEDFGTPR SVISFNALLC AFNHSKQFDK VPQLFDEIPK  180
KYNFSPNKIS YGILVKSYCE SGSPEKAMQI VREMEENDVE VTAVTFTTIL DALYKKGESE  240
EAEKIWNKMI SKGCELDVGA YNVRLMHEHG GKPEHVEALI EEMANSGMKP DTISYNYLMT  300
CYCKNGMIDE AKKVYDDMEI NGCNKNAATF RTFMYYLCRN GDYEKGYMVF KESVKVHKIP  360
DVNTVKYLVE GLMEKKKMKE AKGLIRTIRK KFPPDSLKTW RKVEEALGLA SSSASSSSSS  420
PAFTFGISGS AFSDPFQVAG AADSTDQPFH FSNLEHPSTG FRFFPNFGGG GGGEFESDEW  480
MDSLVGGRDS TDSSDLPSGC DDYGEFGLYG ADPFNGSPPS LFYRELLPEG SYKTNSVLPP  540
LPSSPPPVKD AEVANSMAGS LQKNNVVESS SSAPEIDSSS PPLLKVLLDC ARLCDSEPDR  600
AVKTLNRISK SLREHGDPVE RVAFHFGEAL RSRLSPTAMK NCLVTNDGDA NSEDFLLSYK  660
ALNDACPYSK FAHLTANQAI LEATQTASKI HIVDFGIAQG VQWAALLQAL ATRATGKPIK  720
VRISGIPAPS LGDSPAASLC ATGNRLSEFA KLLELNFEFE PILTPIEDLN ESSFRVQSDE  780
VLAVNFMLQL YNLLDEVPTV VHNALLLAKS LSPKILTLGE YEASLNRVEF YNRFKNALKF  840
YSAIFESLEP NLPRDSPERH QLEKQLLGRR IAGVVGSEEE SGSKRRRVRM EAKEQWKNLL  900
ESSGFKPVAL SHYAISQAKI LLWNYNYSSL YTLIESTPEF LSLAWNDVPL LTVSSWR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	884	888	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	1e-173	GRAS family protein