PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022927995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | LBD | ||||||||
Protein Properties | Length: 351aa MW: 39034.3 Da PI: 7.4999 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.4 | 5e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++++l XP_022927995.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_022927995.1 102 NAKKE 106 98876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNASQR 60 EDAVNSLAYE AEFRLRDPVY GCVGLISVLQ HKLKQMQSDL YNAKKELASY VGPQAMIPIL 120 QPSTAIMTTN PQGPVTSPSS SVLLPYNMSP MFGIPSSGGG GSSQQMLIRE SPHQQQQHQH 180 QIQQQQQQLF EAQQLAAAVA AREQQEMFRA YEQKQTQQQQ QQQQQQQQHS PSQRQHELLR 240 FNGFDPAGVG AGAGAGAGGF NNQMNSPSDL TLGTFPDNSY QIQTQPEHSH SHSHSHHHHP 300 LQVQLFPQPQ QTQLDQSQQQ QQQPHPHRSQ QIHKPEATAD DGRNINIGPS C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-74 | LBD family protein |