PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022926095.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 712aa MW: 77756.3 Da PI: 7.0892

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022926095.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.5	6e-24	151	252	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_022926095.1 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 242 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_022926095.1 243 GELRLGIRRA 252 999**996 PP
2	Auxin_resp	106	4.4e-35	277	358	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+ks F+v+YnPra++s+Fv +++k++k++++++svGmRf+++feted++ r +G ++g+ d+dp+ Wp+S+WrsL XP_022926095.1 277 VVNAISSKSSFSVCYNPRATSSQFVLPFHKFLKSMNRSFSVGMRFRLSFETEDAADLRHTGHITGIGDVDPIGWPGSRWRSL 358 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MGALIDLNTT EEDESPSSAA SSVSSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGNLVVYLPQ GHLEKMQEFP ATPSDLPPHI LCRVIDVQLH QAEAGSDEVY AQVSLLPENE 120 QMEHKMQEEM SNDIEEEDVE EGEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL 180 DYNQQRPSQE LVAKDLLGLK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG 240 NDGELRLGIR RAAQLKSGST FSNICSQKLN SSSIMDVVNA ISSKSSFSVC YNPRATSSQF 300 VLPFHKFLKS MNRSFSVGMR FRLSFETEDA ADLRHTGHIT GIGDVDPIGW PGSRWRSLMV 360 RWDDGEINRH GRVSPWEIEP SGSVSMSSNL VPPGLKRSRI GLSSTKLEFP VPHGIGATDF 420 GESLRFHKVL QGQEILGYNT PTDCDDNTRY HPPEKRRLLP DLHGSGIALM RNGPRNRLIN 480 SETSSRGFVF DESFQFQKVL QGQEIFPGPF YGRTTATNEV KESGGCGPVD GFRLSTTRDG 540 WPTPMQCENF HTRSSIPSAQ VSSPSSVFMF QQSMVPVLSF DSHNRGSMNN STSHNSGTAF 600 MTDNSMCPTS LGELNLLGLS HPSTTTASAF SGSKDLSSTT KAGCRLFGFS LTEEKNVGNT 660 DKGSPPTTPI HAGTTIGAQC PLKSPLMSKV VGSNCTKVSN ISARAVEAIY FA

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MGALIDLNTT EEDESPSSAA SSVSSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGNLVVYLPQ GHLEKMQEFP ATPSDLPPHI LCRVIDVQLH QAEAGSDEVY AQVSLLPENE  120
QMEHKMQEEM SNDIEEEDVE EGEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL  180
DYNQQRPSQE LVAKDLLGLK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG  240
NDGELRLGIR RAAQLKSGST FSNICSQKLN SSSIMDVVNA ISSKSSFSVC YNPRATSSQF  300
VLPFHKFLKS MNRSFSVGMR FRLSFETEDA ADLRHTGHIT GIGDVDPIGW PGSRWRSLMV  360
RWDDGEINRH GRVSPWEIEP SGSVSMSSNL VPPGLKRSRI GLSSTKLEFP VPHGIGATDF  420
GESLRFHKVL QGQEILGYNT PTDCDDNTRY HPPEKRRLLP DLHGSGIALM RNGPRNRLIN  480
SETSSRGFVF DESFQFQKVL QGQEIFPGPF YGRTTATNEV KESGGCGPVD GFRLSTTRDG  540
WPTPMQCENF HTRSSIPSAQ VSSPSSVFMF QQSMVPVLSF DSHNRGSMNN STSHNSGTAF  600
MTDNSMCPTS LGELNLLGLS HPSTTTASAF SGSKDLSSTT KAGCRLFGFS LTEEKNVGNT  660
DKGSPPTTPI HAGTTIGAQC PLKSPLMSKV VGSNCTKVSN ISARAVEAIY FA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein