PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022924008.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 483aa MW: 53177.5 Da PI: 8.587

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022924008.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.5e-17	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ XP_022924008.1 60 REKWTEEEHQRFLEALKLYGRG-WRQIKEHVG-TKTAVQIRSHAQKF 104 789*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MGVQEKNEGT LSNGSISAAN NFLPKDGAQL DPLMRVSSIS SDSNENALKV RKPYTISKQR 60 EKWTEEEHQR FLEALKLYGR GWRQIKEHVG TKTAVQIRSH AQKFFSKVVR ESSGSNESSI 120 NPIEIPPPRP KRKPVHPYPR KAVDSIKAIS VAREPKRSPS PNLSAAEKET QSPTSVLTAF 180 SSDDQISAVS EQHNRCPSPI SQTVDMQSAR ISSVRKGELY LSSKSNGGEE KGMLSLESSS 240 ERFSEDSLTM KFKSGSVYKK VDNKLHSPVR SIKLFGRTVM VTGDKQPPGH DFEVTKSLAF 300 DGDSKNTCQA YAEKPVQILP SKHVDVNLAL GMDNNGDWNM SPGGAPTNTL GNQDKSVPYV 360 KAMPNAPQTC WSLCQNVPYF YLAPSDQTST GTCTDHVMEE RIQDDNSLES SCADSCSGSP 420 SKNENENQSP EVKCQEPCLV GRGNANESKK GFVPYKRCLA QRDTSSALIV SEEREGRRAR 480 VCL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MGVQEKNEGT LSNGSISAAN NFLPKDGAQL DPLMRVSSIS SDSNENALKV RKPYTISKQR  60
EKWTEEEHQR FLEALKLYGR GWRQIKEHVG TKTAVQIRSH AQKFFSKVVR ESSGSNESSI  120
NPIEIPPPRP KRKPVHPYPR KAVDSIKAIS VAREPKRSPS PNLSAAEKET QSPTSVLTAF  180
SSDDQISAVS EQHNRCPSPI SQTVDMQSAR ISSVRKGELY LSSKSNGGEE KGMLSLESSS  240
ERFSEDSLTM KFKSGSVYKK VDNKLHSPVR SIKLFGRTVM VTGDKQPPGH DFEVTKSLAF  300
DGDSKNTCQA YAEKPVQILP SKHVDVNLAL GMDNNGDWNM SPGGAPTNTL GNQDKSVPYV  360
KAMPNAPQTC WSLCQNVPYF YLAPSDQTST GTCTDHVMEE RIQDDNSLES SCADSCSGSP  420
SKNENENQSP EVKCQEPCLV GRGNANESKK GFVPYKRCLA QRDTSSALIV SEEREGRRAR  480
VCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	4e-51	MYB_related family protein