PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022922381.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 25110.9 Da    PI: 10.1337
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022922381.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.51.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+s+
  XP_022922381.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSN 59
                    79***********************************************95 PP
2K-box64.53.8e-22941722098
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++  + k++e L+ ++R+llG +L+s+s+ eLqqLe+qLe+sl+kiRs+K+++l+e+i +l++ ek l een aL+ k+
  XP_022922381.1  94 DSFTITKKLEHLEVSKRKLLGGGLDSCSIDELQQLERQLERSLSKIRSRKYQILKEEIMKLKEEEKLLLEENAALQVKV 172
                     3335899********************************************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSNF  60
SMNKTIDRYQ NRTKDLMSSN NTAVEDLQLE KELDSFTITK KLEHLEVSKR KLLGGGLDSC  120
SIDELQQLER QLERSLSKIR SRKYQILKEE IMKLKEEEKL LLEENAALQV KVRRKSSKKR  180
ETKQRSESKE QDIMDVETEL FIGLPERRTT TNGFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.17e-58MIKC_MADS family protein