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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_022922203.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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| Family | YABBY | ||||||||
| Protein Properties | Length: 305aa MW: 34381.4 Da PI: 10.6394 | ||||||||
| Description | YABBY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | YABBY | 222.3 | 1.4e-68 | 105 | 264 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.lleelkveeenlksnvekeesastsvss 98
++eq+Cyv+Cn C+t+lavsvP +slfk+vtvrCGhCt+ll vn ++ ll++ +++++ ++ + +le+ + + n+ n+ + +++ +
XP_022922203.1 105 AAAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVN--MRGLLLPSPNQFHHLGHSHnILENIPTPNPNYLINQFAATNNFVTP-- 195
679****************************************66..5667788888877776655488998888888877776655544333.. PP
YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
s+ +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl
XP_022922203.1 196 ---SRGVIDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 264
...4567889***999******************************************************97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 305 aa Download sequence |
MPTLYSLNFV SKLIIKAQKK KKKKKKKGKA DPRRWLICQS HQSVNQTRPI INHQSRFYKK 60 QRRKYNNLDM SSSSSSSSPT STATATTTTT TTLSQQQLLD HHLPAAAEQL CYVHCNICDT 120 VLAVSVPCSS LFKTVTVRCG HCTNLLPVNM RGLLLPSPNQ FHHLGHSHNI LENIPTPNPN 180 YLINQFAATN NFVTPSRGVI DELPRPPVIN RPPEKRQRVP SAYNRFIKDE IQRIKSVNPD 240 ISHREAFSAA AKNWAHFPHI HFGLMPDQTV KKTNIRQQEA EQSVLMKDNG GFYTSAAANV 300 GVSHF |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 19 | 25 | KKKKKKK |
| 2 | 19 | 27 | KKKKKKKKK |
| 3 | 20 | 26 | KKKKKKK |
| 4 | 21 | 27 | KKKKKKK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G45190.1 | 1e-76 | YABBY family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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