PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022922096.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 500aa MW: 55992.1 Da PI: 8.4277

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022922096.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	410	432	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C k+F + L H r+H XP_022922096.1 410 HKCPICEKVFASGQALGGHKRSH 432 79*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MEANLASRHV CKLCNKSFAC GRSLGGHMRS HLTNNLVDSD EKHSRTSLQF ADFSAGSVSN 60 MEEEEEVDME GGNLAGFGYG LRKNPKKTQK LEFLSEESSL QDKFCRECGK GFQSWKALFG 120 HMKCHSERVV SSSQELEEPD SHITDAKQKL VMDIQSDNEI EAPNNKRKRS RRRRTAQMGT 180 ENSITSFSFA TDSSVFEIQQ EQEVAISLML LSMDVGNWVG FNSPVESSDN NSKFLDTPSA 240 VESKTSVSNK LKAKKMESEV KKPEKSSSVF MNKGKMIDQR SGSKSFPPKN DQNQARFSSD 300 MIAKSGKKTL AEFWDSKICK KPKKRSKFEC DICNKIFHSY QALGGHRASH KKLKGCFVES 360 AMEEDEEEEI DSESSAEMAI SAYPTAESKL AKGLNNGEMG YQIPKKSSNH KCPICEKVFA 420 SGQALGGHKR SHLISGLKNR ATIQIQKQVP EIRRFLDLNL PPEPVEIENK NHNLASLKHP 480 WWAAANEHKH EALVNVGFHI

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MEANLASRHV CKLCNKSFAC GRSLGGHMRS HLTNNLVDSD EKHSRTSLQF ADFSAGSVSN  60
MEEEEEVDME GGNLAGFGYG LRKNPKKTQK LEFLSEESSL QDKFCRECGK GFQSWKALFG  120
HMKCHSERVV SSSQELEEPD SHITDAKQKL VMDIQSDNEI EAPNNKRKRS RRRRTAQMGT  180
ENSITSFSFA TDSSVFEIQQ EQEVAISLML LSMDVGNWVG FNSPVESSDN NSKFLDTPSA  240
VESKTSVSNK LKAKKMESEV KKPEKSSSVF MNKGKMIDQR SGSKSFPPKN DQNQARFSSD  300
MIAKSGKKTL AEFWDSKICK KPKKRSKFEC DICNKIFHSY QALGGHRASH KKLKGCFVES  360
AMEEDEEEEI DSESSAEMAI SAYPTAESKL AKGLNNGEMG YQIPKKSSNH KCPICEKVFA  420
SGQALGGHKR SHLISGLKNR ATIQIQKQVP EIRRFLDLNL PPEPVEIENK NHNLASLKHP  480
WWAAANEHKH EALVNVGFHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	354	KKPKKRSKFECDICNKIFHSYQALGGHRASHKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-32	C2H2 family protein