PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921669.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 575aa MW: 66119.8 Da PI: 5.1908

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921669.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	546	564	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cg+ F ++ L++H+ XP_022921669.1 546 SCETCGEQFESRNKLHKHL 564 6*****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MASGKRCHYE VLGLHIDCTA DEIRSAYRKL ALQRHPDKLV QSGLSQSDAT AQFQELQHAY 60 EVLSDPKERA WYDSHRSQIL FSDAGSVNSN SVVPNLFPFF SNTVYSGYSD SGRGFYKIYS 120 DIFDKIYGNE INFAKKLGLR LDTVRNAPVM GNLDAPYTQV TAFYNYWLGF CTVMDFCWVD 180 QYDVMAGPNR KSRRLMEEDN KKLRKKAKRE YNETVRGLAE FVKKRDKRVT DMAMKRNIEM 240 EKKKEEVRER KKKLEREKME KLKAFEEPDW AKVEEIEEDP EDESEEEKRA KELYCVLCGK 300 KFKSEKQWKN HEQSKKHKEK VAEFKESLDD EEESEEFVDE EQDEKEPTLQ DDGIDKLGEQ 360 FKESFDIEAE EAESGEELSG SEYYDVRDVD QSDIVAEELG SNDDDDETDI LEAMAAGLRN 420 RKNAASLNQP KASSDKAHFE NENDEPNPSE FENVRRGGNN RRAKKKGKGN DETRNETEPN 480 SQNDKNYGDN TSYQQDSPSN SLAKEQRNST QPADRKAVAQ KDTKTNTRHA SKGKKSKATS 540 KDSGTSCETC GEQFESRNKL HKHLGATGHA ALKYR

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MASGKRCHYE VLGLHIDCTA DEIRSAYRKL ALQRHPDKLV QSGLSQSDAT AQFQELQHAY  60
EVLSDPKERA WYDSHRSQIL FSDAGSVNSN SVVPNLFPFF SNTVYSGYSD SGRGFYKIYS  120
DIFDKIYGNE INFAKKLGLR LDTVRNAPVM GNLDAPYTQV TAFYNYWLGF CTVMDFCWVD  180
QYDVMAGPNR KSRRLMEEDN KKLRKKAKRE YNETVRGLAE FVKKRDKRVT DMAMKRNIEM  240
EKKKEEVRER KKKLEREKME KLKAFEEPDW AKVEEIEEDP EDESEEEKRA KELYCVLCGK  300
KFKSEKQWKN HEQSKKHKEK VAEFKESLDD EEESEEFVDE EQDEKEPTLQ DDGIDKLGEQ  360
FKESFDIEAE EAESGEELSG SEYYDVRDVD QSDIVAEELG SNDDDDETDI LEAMAAGLRN  420
RKNAASLNQP KASSDKAHFE NENDEPNPSE FENVRRGGNN RRAKKKGKGN DETRNETEPN  480
SQNDKNYGDN TSYQQDSPSN SLAKEQRNST QPADRKAVAQ KDTKTNTRHA SKGKKSKATS  540
KDSGTSCETC GEQFESRNKL HKHLGATGHA ALKYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDK
2	201	209	KKLRKKAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-151	C2H2 family protein