PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR97240.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HSF

Protein Properties

Length: 617aa MW: 67835.5 Da PI: 4.6263

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR97240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117	1.1e-36	180	272	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++++++l+++isw ++g+sfvv+d+ efa+++Lp++Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F++gkk+ll++i+ RWR97240.1 180 FLSKTYDLIDEPSLNSVISWGQSGESFVVWDTVEFARSILPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEDFQRGKKHLLKNIH 267 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ RWR97240.1 268 RRKSS 272 997 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MDSSENPKKS PPPLPISFIG LPAIGDRGKV EFEGFSSQMG ERMDFSSGSC PLMDSESFSA 60 LKSEKDVAFE ESLGFSAAEG LGLTVPSSLM VDFGSFFPAA GSSSSASGPA ELKSIAFGEK 120 SGSSALVELK GGSFEENVSP SSLSLPSTTL ERESFKDGDG ENAGVPLPLE SLHGVPIPPF 180 LSKTYDLIDE PSLNSVISWG QSGESFVVWD TVEFARSILP RHFKHNNFSS FVRQLNTYGF 240 RKIDTDKWEF ANEDFQRGKK HLLKNIHRRK SSQVSQVGHH VGPSVEMGKS GVEGELEKLR 300 KEKSLLMQEV MHLRHEHHVT AQLVDTMNQQ LLAAEQKQKQ MVLFFAKVFQ NPVFLDHLQS 360 QKEQREGTSS RVKRKFLKQQ QAGPSNLGSS VEKEIVRYEL RWSDATTPTA TKELESDAHQ 420 KLLDHHLQEM VGKLEIDAVA GQQTLTGTEG SDEFEQEQVE ASHQVGMGMP GFPTMDPNEV 480 LFKGKNVVSS QLDSSPGGSG YFISFPEDLS PDKMTPAIMS TEAEAENVIK QEDIWSMGFH 540 SCGSHPSSSY DVWGNYFGSD IQELEVSAGL CNLWDLGAEQ PEEGSGIDKW ADDAPSIDDL 600 EKPSSQFKED DSKKMDP

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MDSSENPKKS PPPLPISFIG LPAIGDRGKV EFEGFSSQMG ERMDFSSGSC PLMDSESFSA  60
LKSEKDVAFE ESLGFSAAEG LGLTVPSSLM VDFGSFFPAA GSSSSASGPA ELKSIAFGEK  120
SGSSALVELK GGSFEENVSP SSLSLPSTTL ERESFKDGDG ENAGVPLPLE SLHGVPIPPF  180
LSKTYDLIDE PSLNSVISWG QSGESFVVWD TVEFARSILP RHFKHNNFSS FVRQLNTYGF  240
RKIDTDKWEF ANEDFQRGKK HLLKNIHRRK SSQVSQVGHH VGPSVEMGKS GVEGELEKLR  300
KEKSLLMQEV MHLRHEHHVT AQLVDTMNQQ LLAAEQKQKQ MVLFFAKVFQ NPVFLDHLQS  360
QKEQREGTSS RVKRKFLKQQ QAGPSNLGSS VEKEIVRYEL RWSDATTPTA TKELESDAHQ  420
KLLDHHLQEM VGKLEIDAVA GQQTLTGTEG SDEFEQEQVE ASHQVGMGMP GFPTMDPNEV  480
LFKGKNVVSS QLDSSPGGSG YFISFPEDLS PDKMTPAIMS TEAEAENVIK QEDIWSMGFH  540
SCGSHPSSSY DVWGNYFGSD IQELEVSAGL CNLWDLGAEQ PEEGSGIDKW ADDAPSIDDL  600
EKPSSQFKED DSKKMDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	3e-72	HSF family protein