PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR97230.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family ARF
Protein Properties Length: 364aa    MW: 40125.8 Da    PI: 8.4846
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR97230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24120221199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+ltpsd+++ g +++p+ +a+++        +++ +s  ++++d +g +We+++iyr++++r++lt+GW++Fv++++L++gD+ +F   +++++el
  RWR97230.1 120 FAKILTPSDANNGGGFSVPRFCADSIfprlnfnANPPVQS--ISIRDVHGTKWEFRHIYRGTPRRHLLTTGWSKFVNQKKLCAGDTALFI--KHRSGEL 214
                 89*********************999*****976666675..9999********************************************..558999* PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  RWR97230.1 215 FVGIRRA 221
                 *****97 PP
2Auxin_resp873.7e-29266349183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ as++++Fe++Y+P a++++Fvv++e ve+alkv ++vG R+kma+eteds + ++ +Gtv+++ +++   W++S WrsL+
  RWR97230.1 266 AAQLASSGKPFEIIYYPNAGSPDFVVRAEAVEDALKVYWTVGFRVKMAMETEDSTRATWfQGTVSSLVASEVGIWRGSLWRSLQ 349
                 78999*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MSFLLKKECG GEVSSSSIDP HIWKACAGSS VRVPTVNTRV FYFPQGHGEQ CSSVPDFSSV  60
PFLKTLVVCR IVSVQLLANQ ENDQVFAKIC LEPIIAAPPV SVSLNDDSDS DACDANVVSF  120
AKILTPSDAN NGGGFSVPRF CADSIFPRLN FNANPPVQSI SIRDVHGTKW EFRHIYRGTP  180
RRHLLTTGWS KFVNQKKLCA GDTALFIKHR SGELFVGIRR ARSTAGSGVG RWKMEDDDLA  240
RRSCNFEEGV LRNGKGKILA ESAVEAAQLA SSGKPFEIIY YPNAGSPDFV VRAEAVEDAL  300
KVYWTVGFRV KMAMETEDST RATWFQGTVS SLVASEVGIW RGSLWRSLQV RLCPLCMQYL  360
LTNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-117ARF family protein