PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR96928.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 511aa    MW: 56430.4 Da    PI: 6.3476
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR96928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.78.1e-1131435101374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv+lL++cAeav+ +d ++a+ lL++l+ +a   g+++qR+a++f+++L  rla  v+ l +   + + + ++s+++  al+l +ev+P ++f+h++aN
  RWR96928.1 143 LVQLLIACAEAVACRDRSQASMLLSELRANALVFGTSFQRVASCFVQGLTDRLAL-VQPLGAVGVVAPMA-RTSEKKEEALHLVYEVCPHIQFGHFVAN 239
                 689***************************************************8.55555444444444.457777789999**************** PP

        GRAS 100 qaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   Ilea+ege+ vH++D++++    +G QW  L+++La+R++gpp  +RiTgvg+      ++l+++g+ L+ +A+ lg+++ef+v v+++le+l+ ++
  RWR96928.1 240 ASILEAFEGENLVHVVDLGMTlglpHGHQWRRLIHSLANRAGGPPrCVRITGVGP----CGDRLQSIGDDLELYAKGLGIQLEFSV-VESNLENLRAKS 333
                 *****************98873333788*************998878********....**************************9.79********** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 ++   gE+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++
  RWR96928.1 334 FKQLDGEVLVVNSILQLHCVVKESRGALN---AVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAE 429
                 *********************88887777...9****************************************************************** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p p++  + +qak  l k k  +gy++ ee+g+lvlgWk++p+v++S+W+
  RWR96928.1 430 EIKNIVSCEGPARVERHERVDQWRRRMSRAGFQPSPIK--MIAQAKQWLGKNKvCEGYTIAEEKGCLVLGWKSKPIVAASCWK 510
                 ************************************97..5679*********9****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    
MASSLYSESE EKSSLTHGMG YVLDLTLSAV SCYQPPPYLP FWENSSSTWV PTSPDSHGQN  60
KRIKTTLSGD ESIGSNINLY SGGGNGDSLY KQLNSLPRLQ FRDHIWSYTQ RVLAAEAVEE  120
ASETAEDTED GGEEAGIGDG MRLVQLLIAC AEAVACRDRS QASMLLSELR ANALVFGTSF  180
QRVASCFVQG LTDRLALVQP LGAVGVVAPM ARTSEKKEEA LHLVYEVCPH IQFGHFVANA  240
SILEAFEGEN LVHVVDLGMT LGLPHGHQWR RLIHSLANRA GGPPRCVRIT GVGPCGDRLQ  300
SIGDDLELYA KGLGIQLEFS VVESNLENLR AKSFKQLDGE VLVVNSILQL HCVVKESRGA  360
LNAVLQIIHE LSPKVLVLVE QDSSHNGPFF LGRFMEALHY YSAIFDSLDA MLPKYDTRRA  420
KMEQFYFAEE IKNIVSCEGP ARVERHERVD QWRRRMSRAG FQPSPIKMIA QAKQWLGKNK  480
VCEGYTIAEE KGCLVLGWKS KPIVAASCWK C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-77GRAS family protein