PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR96667.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 841aa    MW: 91955.8 Da    PI: 6.3933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR96667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-182885457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  RWR96667.1 28 YVRYTAEQVEALERVYAECPKPSSMRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 85
                5789****************************************************97 PP
2bZIP_1201.5e-06791241863
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l +e+
  RWR96667.1  79 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVDEN 124
                 9****************************************98876 PP
3START160.99.7e-511663732204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+ +sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l++++l
  RWR96667.1 166 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSIGIVAISHHCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELIYMQL 263
                 7899******************************************************.7777777777***********999999999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+++Ry+ +l++g++v++++S++     p+    s++vRae+lpSg+l++p+++g+s +++v+h +l++++++++lr+l++s+ a ++
  RWR96667.1 264 YAPTTLAPaRDFWTLRYTTSLEDGSLVVCERSLSGSGAGPNgsiASQSVRAEMLPSGYLVRPCEGGGSIIHIVDHLNLEAWTVPEVLRPLYESSKAIAQ 362
                 **********************************9999999999******************************************************* PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++va+l++ +
  RWR96667.1 363 KMTVAALRHIR 373
                 *******9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    
MAMTIATHRE SGSSSSSGMN KHLDAGKYVR YTAEQVEALE RVYAECPKPS SMRRQQLIRE  60
CPILCNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VDENGYMRQQ LQNASLATTD TSCESVVTTP QHPLKDVNNP AGLLSIAEET LAEFLSKATG  180
TAVDWVQMPG MKPGPDSIGI VAISHHCSGV AARACGLVSL EPTKIAEILK DRPSWFRDCR  240
SLEVFTMFPA GNGGTIELIY MQLYAPTTLA PARDFWTLRY TTSLEDGSLV VCERSLSGSG  300
AGPNGSIASQ SVRAEMLPSG YLVRPCEGGG SIIHIVDHLN LEAWTVPEVL RPLYESSKAI  360
AQKMTVAALR HIRQIAQETS GEVFYGLGRQ PAVLRTFSQR LSRGFNDAIN GFSDDGWSVL  420
GCDGGEDVII AVNSTKNMGT HVNPANALAA PGGILCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADYNVDAY SAASLKAGSY AFLGLRPTRF SGSQIIMPLA HTVENEELLE VVRLEGHALT  540
QEEAVLSRDI HLLQLCSGVD ENAVGAFSEL VFAPIDESFP DDAPLLPSGF RVIPLDSKTD  600
GLSTNRTLDL ASSLETGSAS NRTGGNASPS DGSVRSVLTI AFQFPYENHL QDSIATMARQ  660
YVRSVVSSVQ RVAMAISPSR LGSHVGPKLP LGSPEALTLA RWICQSYSYH LGVELLRSDS  720
QTSDSILKLL WHHPDAILCC SLKSLPVFTF ANQAGLDMLE TTFLALQDIA LDKIFDESGQ  780
KMLCSEFAKI MQQGYAHLPV GVCLSTMGRH VSYDQAIAWK VLGEDNNVHC LAFAFVNWSF  840
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein