PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96401.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 707aa MW: 77672.7 Da PI: 7.6725

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.2	1.5e-23	150	251	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el+ RWR96401.1 150 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QHRPSQELIAKDLYGTEWRFRHIYRGQPRRHLLTTGWSAFVSKKKLVSGDAVLFL--RAENEELR 245 99**************************952.4456679**********************************************..34888889 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ RWR96401.1 246 LGIRRS 251 999986 PP
2	Auxin_resp	103	3.8e-34	276	357	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s++s+F+++YnPras+s+F+++++k+ k +++++ vGmRfk ++eted++ rr++G+++++ d+d + Wp+SkWr+L RWR96401.1 276 VANALSSRSAFHIYYNPRASASKFIIPYRKFIKIFDHSFHVGMRFKTRLETEDAADRRYTGLITAIGDMDHLTWPGSKWRCL 357 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MAIDLNTFGD EALEDPPTYS PSASLSGSPS SWICLELWHA CAGPLTSLPR KGGLVVYFPQ 60 GHLEQAANYC PKVAYNLPPH VFCRVVDVKL HAEPTTDEVY AQVSLFPENE VGDLYILALT 120 LEKKFQAGQI EGDGGEEIDF SSKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD 180 YKQHRPSQEL IAKDLYGTEW RFRHIYRGQP RRHLLTTGWS AFVSKKKLVS GDAVLFLRAE 240 NEELRLGIRR SAQLKSGSPY SVLCSQRLNI GTLASVANAL SSRSAFHIYY NPRASASKFI 300 IPYRKFIKIF DHSFHVGMRF KTRLETEDAA DRRYTGLITA IGDMDHLTWP GSKWRCLSVK 360 WDDDVDPTKR NRVSPWEIEP SSSVPASRNL LAPGSKRTKL GVPSIKSDVP VPDGSRFSDF 420 KEPLGFQKKV LQGQEILGFR APYDGIDVSN HQKPEIRGGI PDPNMSWATG TGNSVIIPLG 480 NPDTSSKSIG FGESVQFGKV LQGQEICPLK PLCRGVWDNA QALENGSFGV FEGALMSSAG 540 SRRPTFLQGY CNSQLHPAKR PVQVFSPSSV LMFQQATGQA SCTYSKYIMD NNSREGTYFG 600 CFENANLPDG PHNAVEDLKR MYPPVQLSRE LNHPGTAHAT VPASKADSWD GLGVLPTGKS 660 GCRLFGFLLT KGASVANEFN ASLTASPSST EDLDLDASSQ CTSLERQ

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MAIDLNTFGD EALEDPPTYS PSASLSGSPS SWICLELWHA CAGPLTSLPR KGGLVVYFPQ  60
GHLEQAANYC PKVAYNLPPH VFCRVVDVKL HAEPTTDEVY AQVSLFPENE VGDLYILALT  120
LEKKFQAGQI EGDGGEEIDF SSKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD  180
YKQHRPSQEL IAKDLYGTEW RFRHIYRGQP RRHLLTTGWS AFVSKKKLVS GDAVLFLRAE  240
NEELRLGIRR SAQLKSGSPY SVLCSQRLNI GTLASVANAL SSRSAFHIYY NPRASASKFI  300
IPYRKFIKIF DHSFHVGMRF KTRLETEDAA DRRYTGLITA IGDMDHLTWP GSKWRCLSVK  360
WDDDVDPTKR NRVSPWEIEP SSSVPASRNL LAPGSKRTKL GVPSIKSDVP VPDGSRFSDF  420
KEPLGFQKKV LQGQEILGFR APYDGIDVSN HQKPEIRGGI PDPNMSWATG TGNSVIIPLG  480
NPDTSSKSIG FGESVQFGKV LQGQEICPLK PLCRGVWDNA QALENGSFGV FEGALMSSAG  540
SRRPTFLQGY CNSQLHPAKR PVQVFSPSSV LMFQQATGQA SCTYSKYIMD NNSREGTYFG  600
CFENANLPDG PHNAVEDLKR MYPPVQLSRE LNHPGTAHAT VPASKADSWD GLGVLPTGKS  660
GCRLFGFLLT KGASVANEFN ASLTASPSST EDLDLDASSQ CTSLERQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-176	ARF family protein