PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR96388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 27837.5 Da PI: 6.8531 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.7 | 1.7e-28 | 17 | 115 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+Ck++r+kC+++ C+lap fpae++++f++v+k+FG+sn +k+++a+++ e + ++++sl++eA +r+rdP +G+ + +++lq + ++l+ +++l RWR96388.1 17 ACASCKHQRKKCKREiCPLAPFFPAERTREFEAVQKVFGVSNAQKMIQAVDTREeQFIVAESLIWEAICRLRDPKHGCSADYKRLQAEKNKLQLLVHSL 115 7************999**********************************7666488999******************999999999888877655554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MEKERSMAAK KEETQQACAS CKHQRKKCKR EICPLAPFFP AERTREFEAV QKVFGVSNAQ 60 KMIQAVDTRE EQFIVAESLI WEAICRLRDP KHGCSADYKR LQAEKNKLQL LVHSLEKQNQ 120 ELLRLQISKN MQCFHNNVPQ QNQSLMKITY DNFNYIESGL IGTSNNDLIN RIDFGSLAHS 180 SIQHNEDYSF TDQLYTPMKT NVELMNQFNE AKIDSSGHVE PNAINMDNIM SSLCGTSWQE 240 AP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 8e-30 | LBD family protein |