PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95862.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 1109aa MW: 124354 Da PI: 6.5376

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.4	5.7e-23	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++g W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l+ RWR95862.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHGAAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKSQLL 222 99***************************9445444.38**********************************************..45677789 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ RWR95862.1 223 LGIRRA 228 999997 PP
2	Auxin_resp	123.8	1.2e-40	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+ dldp+rW+nS+Wr L+ RWR95862.1 253 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGIGDLDPIRWKNSEWRKLQ 335 79******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1109 aa Download sequence
MKAPANLNGF SNSGEGEKKN IISELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK 60 ETDGIPNYPS LPSKLICVLL NVTLHADTET DEVYAQMTLQ PVNKCDKEAL LASDLGLKQS 120 KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAK DLHGAAWTFR 180 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDEKSQ LLLGIRRANR QQPALSSSVL 240 SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYNKAMYTQ VSLGMRFRMM 300 FETEESGVRR YMGTITGIGD LDPIRWKNSE WRKLQVGWDE STAGERPNRV SIWEIEPVTS 360 PFYICPPPFL RPKFPRQPGM PDDESEIENA FKRAMPWLGD DIGIKDAQSP LFPGFSLVQW 420 MSMQQQNPQL IGSAAQSGYF PSMVAPALQN NLSPKDSSKL LSFQAQAMPP PSSNSNLPKN 480 EQIDRADQFQ QLPLTWPQQL QQQHQPPPII PQQLQQQQQR QHHHHQEQQA TPPPPLLLQQ 540 QQQLQQQQQQ LRPTVMSTGV VDQSQQKQQQ SFVNEHQNQL LQQSLLQSQL QQQQRFLTPN 600 TQLQQQNILQ QLQQQNILQQ PSQNPLQSTT LPQNLQFQQQ LQQLQQLPLS QQHLQLQLLQ 660 KLQQQQQLLS QLSPHLQPQL QQQQQQQQQQ LQLQQQHQQQ LLQQQQHQQQ QQPPPQQQQQ 720 QTHQFQQSQL QQQQQLNNIH FSQSSLNQLQ HFSSNNVLSH IKGQLPVRAN SGPTNGDAPS 780 CSTSPSTTNC PVSSSSLLNR TSQGPAVVLV DDMTAQPVNN STQELHAKSN NQIKNEWSTA 840 KDTDQLAYRS AITDHLEASS SATSFCLDGS LQQTSSVPAF CLDGEVQPDS RNNVLFGVNI 900 DGMTPDTLLS RGFDSGKDLQ NLLSGYSNQR DIETELSTAA ISSQSFGVPD MSFKPGCSSD 960 AIVNENGALN RGVWGNQSQR MRTYTKVQKR GSVGRSIDVT RYRGYDELRH DLARMFGIEG 1020 LLEDPHGSEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSAAEVQQM SLNGDLVNLP 1080 IQNQACSGSD NGNAWKVHYD DNSVTSFDR

Sequence ? help Back to Top

Protein Sequence Length: 1109 aa Download sequence

MKAPANLNGF SNSGEGEKKN IISELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK  60
ETDGIPNYPS LPSKLICVLL NVTLHADTET DEVYAQMTLQ PVNKCDKEAL LASDLGLKQS  120
KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAK DLHGAAWTFR  180
HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDEKSQ LLLGIRRANR QQPALSSSVL  240
SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYNKAMYTQ VSLGMRFRMM  300
FETEESGVRR YMGTITGIGD LDPIRWKNSE WRKLQVGWDE STAGERPNRV SIWEIEPVTS  360
PFYICPPPFL RPKFPRQPGM PDDESEIENA FKRAMPWLGD DIGIKDAQSP LFPGFSLVQW  420
MSMQQQNPQL IGSAAQSGYF PSMVAPALQN NLSPKDSSKL LSFQAQAMPP PSSNSNLPKN  480
EQIDRADQFQ QLPLTWPQQL QQQHQPPPII PQQLQQQQQR QHHHHQEQQA TPPPPLLLQQ  540
QQQLQQQQQQ LRPTVMSTGV VDQSQQKQQQ SFVNEHQNQL LQQSLLQSQL QQQQRFLTPN  600
TQLQQQNILQ QLQQQNILQQ PSQNPLQSTT LPQNLQFQQQ LQQLQQLPLS QQHLQLQLLQ  660
KLQQQQQLLS QLSPHLQPQL QQQQQQQQQQ LQLQQQHQQQ LLQQQQHQQQ QQPPPQQQQQ  720
QTHQFQQSQL QQQQQLNNIH FSQSSLNQLQ HFSSNNVLSH IKGQLPVRAN SGPTNGDAPS  780
CSTSPSTTNC PVSSSSLLNR TSQGPAVVLV DDMTAQPVNN STQELHAKSN NQIKNEWSTA  840
KDTDQLAYRS AITDHLEASS SATSFCLDGS LQQTSSVPAF CLDGEVQPDS RNNVLFGVNI  900
DGMTPDTLLS RGFDSGKDLQ NLLSGYSNQR DIETELSTAA ISSQSFGVPD MSFKPGCSSD  960
AIVNENGALN RGVWGNQSQR MRTYTKVQKR GSVGRSIDVT RYRGYDELRH DLARMFGIEG  1020
LLEDPHGSEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSAAEVQQM SLNGDLVNLP  1080
IQNQACSGSD NGNAWKVHYD DNSVTSFDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein