PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR95534.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 372aa    MW: 42604.8 Da    PI: 5.0727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR95534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06102125226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC ff + G+C  G +CkF+H+
  RWR95534.1 102 KSILCEFFKA-GQCTKGFKCKFSHD 125
                 6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MPPKQQQSKG DIAKKQKVVE DKTFGLKNKN KSKNVQKYVQ SLHQSAQPKP DPSKIAAKKK  60
KEEEKAREKE LNDLFKVAVS QPKVPVGMSS YSFFVDVRGD PKSILCEFFK AGQCTKGFKC  120
KFSHDLNVQR KGEKIDIYSD KRDEETMEDW DQETLEKVVE SKKTEYNSNK PTEIVCKYFL  180
EAVEKKQYGW FWACPNGGKD CHYRHALPPG YVLKSQMKAL LEEETEKISI EEEIENQRAK  240
VATSTPMTPE LFVQWKKKTM DEREAGLAAQ RADRAKHDRM SGRELFLSDA SLFVDDVEAC  300
ERYQREEEPE VTENKDKNES GHIGPSTSAN VEEEVLADDD DDELDMDELN ELEASLSRTS  360
IQIHEPSIET SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-155C3H family protein