PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR94221.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 556aa    MW: 62217.5 Da    PI: 6.0689
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR94221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.11.5e-821825541374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfs 94 
                 l +lLl+ A+ +s+++  +a +lL++   l+s+ g+p+qR++ yf+ AL +++ r++ ++++    + +++++ ++e+ +        + e  P++++ 
  RWR94221.1 182 LAHLLLATADKISNQQYDEAYKLLTQCCYLSSNVGNPVQRVVYYFAGALLEKIDRETGTISSRGVEEIAKWRENIHEALIGPHpahlaWLERLPFPQII 280
                 579****************************************************888888877666666555333332221123335*********** PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                 ++t  qaIl+ v +++++H+iD++ + G+QW+aL+qaLa R   +  +l+i +vg     s+e++ ++++ L +fA++l++pf+f+++v+++++d++ +
  RWR94221.1 281 QFTEIQAILDNVGSAKKIHVIDLGPGIGIQWAALIQALAVRVaYPFEHLKISVVGT----SAENIMKIRKWLVSFAKTLNLPFSFKAVVVSDMKDIKED 375
                 *****************************************966777*********....9************************************** PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++++ +E++ V  ++ l ++l+++ +le+    ++k++k+l+P +++v+e e++hns+sF +rf++ l +y alfd+l++ + +++ +r+ vE  +++
  RWR94221.1 376 LFELDANEVVGVYAHFTLRTMLARPDCLEN----LMKVIKKLNPSIMIVTEVEVKHNSPSFINRFTKVLFHYCALFDCLDTYMDSNDTNRMLVEDNFFS 470
                 **********************99999999....***************************************************************** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+ ++a+eg+e++  + +   Wr+ ++++GF++ +ls++  +qa+l++++v+ +   ++  + ++l+ gW++ pL+ vSaW+
  RWR94221.1 471 LDIRCMIATEGSESIIMNVENDDWRSFFKRFGFEETELSQRSLDQANLVVKQVAhGSYCTLGLNGKALTVGWRGAPLFYVSAWK 554
                 ******************************************************555456667777788**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MANPLFSLEA FHSNGGQEID LPGFGRAGKA TNSKDGMHSD LVCMEIQPSQ EATEFNAGPN  60
YHLESSWVDS TMELVELKGI TKEHVEHKKE KARPISCATL ELLRSYITGC KRLNGEKLID  120
LSNEAACPKG GRRLSTKDVM RVASAHIMEL SVQIESGLST LGHPSVSILP SLTDEEIKDV  180
ELAHLLLATA DKISNQQYDE AYKLLTQCCY LSSNVGNPVQ RVVYYFAGAL LEKIDRETGT  240
ISSRGVEEIA KWRENIHEAL IGPHPAHLAW LERLPFPQII QFTEIQAILD NVGSAKKIHV  300
IDLGPGIGIQ WAALIQALAV RVAYPFEHLK ISVVGTSAEN IMKIRKWLVS FAKTLNLPFS  360
FKAVVVSDMK DIKEDLFELD ANEVVGVYAH FTLRTMLARP DCLENLMKVI KKLNPSIMIV  420
TEVEVKHNSP SFINRFTKVL FHYCALFDCL DTYMDSNDTN RMLVEDNFFS LDIRCMIATE  480
GSESIIMNVE NDDWRSFFKR FGFEETELSQ RSLDQANLVV KQVAHGSYCT LGLNGKALTV  540
GWRGAPLFYV SAWKLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-51GRAS family protein