PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92899.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 603aa MW: 64420.2 Da PI: 8.9257

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H RWR92899.1 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	12.5	0.00046	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ RWR92899.1 146 WKCDKCSKRYAVQSDWKAHSKTC 168 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MAAASSSTVF FGIREEDQNQ IKQQQSSTPT SSTAPTTAPQ KKKRNLPGTP NPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLRQ KTTKEVKKKV YLCPEPTCVH 120 HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAQE SARLPTGLSN MGSHLYGSSN MGLALSQVGS QISSLQDQSH 240 PSSDLLRLRG AGGGAQFDHI LSSSNPSPFR QQSSSPFFLP ASNQDFHEEP QSHHGILQNK 300 PFQGLMHLPD LQDNSNTSSS AAAANLFNLS FFSNSSNISS MNNNSSNNNG HLSSSGLLIP 360 DQFTNGNAGG EASTLFSGNV MGDHIGSGVS LYNPSVQNDS VIPQMSATAL LQKAAQMGAT 420 TSGNSASLLR GFGSSSSKQD RSQISANFRG GFGGGGGGES MRSQLDNETQ LQDLMNSLTN 480 GNSSLFGGGS GVAAAQFGGS CAPEQETGFG GFNAGRTSLE QQNHSSHLSN LDEAKLHQNL 540 AASMGGSDRL TRDFLGVGGM VRGISGAMSQ RDQHHGSINF GSLDSEMKNA ASATRSFGGG 600 NLL

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MAAASSSTVF FGIREEDQNQ IKQQQSSTPT SSTAPTTAPQ KKKRNLPGTP NPDAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLRQ KTTKEVKKKV YLCPEPTCVH  120
HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAQE SARLPTGLSN MGSHLYGSSN MGLALSQVGS QISSLQDQSH  240
PSSDLLRLRG AGGGAQFDHI LSSSNPSPFR QQSSSPFFLP ASNQDFHEEP QSHHGILQNK  300
PFQGLMHLPD LQDNSNTSSS AAAANLFNLS FFSNSSNISS MNNNSSNNNG HLSSSGLLIP  360
DQFTNGNAGG EASTLFSGNV MGDHIGSGVS LYNPSVQNDS VIPQMSATAL LQKAAQMGAT  420
TSGNSASLLR GFGSSSSKQD RSQISANFRG GFGGGGGGES MRSQLDNETQ LQDLMNSLTN  480
GNSSLFGGGS GVAAAQFGGS CAPEQETGFG GFNAGRTSLE QQNHSSHLSN LDEAKLHQNL  540
AASMGGSDRL TRDFLGVGGM VRGISGAMSQ RDQHHGSINF GSLDSEMKNA ASATRSFGGG  600
NLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-117	C2H2 family protein