PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92462.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 333aa MW: 37436.3 Da PI: 4.6104

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k RWR92462.1 61 KKRRLSIEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 114 5568999**********************************************9 PP
2	HD-ZIP_I/II	128.2	3.5e-41	60	152	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++++e+L +el+e RWR92462.1 60 EKKRRLSIEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYETLKINFDALHRDKETLLAELRE 152 69**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MKRLSSSDSL GATMISICPS AEEKGSSGGT SNVYNNRGYP AILDGLDEED CIEEPGHVAE 60 KKRRLSIEQV KALEKNFEVE NKLEPERKVK LAQELGLQPR QVAVWFQNRR ARWKTKQLER 120 DYGVLKNNYE TLKINFDALH RDKETLLAEL RELKSKLNND DKSEINHPIK EEIEPFPSDS 180 ENKLSEEQSK VSAMGAMEGS ENTTDQNQLD HFNGGGLFPD FKDGSSDSDS SAILNDDNSP 240 NRAISSEAFL PSIMIYPPTS SALRCSYSSS YSSSIGCLQF SDSRASANAQ KAYHHQFPRM 300 EEPSFLNGEE ACDFFSEEQA PTLQWCSEPW ELK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	90	KKRRLSIEQVKALEKNFEVENKLEPERKVK
2	109	117	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-59	HD-ZIP family protein