PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR91664.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 21754 Da PI: 7.3371 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.9 | 1.9e-39 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p er +a+ +++yeA+ar++dPvyG+v++i++lqqq+++l+a+l +l+ RWR91664.1 8 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKIFGASNVSKLLMHVPLAERCEAVVTIAYEAQARISDPVYGCVAHIFALQQQVASLQAQLMQLR 106 7*************************99*******************************************************************9988 PP DUF260 99 ee 100 ++ RWR91664.1 107 AQ 108 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MGTGAGSPCG ACKFLRRKCA SDCIFAPYFC SEQGPARFAA IHKIFGASNV SKLLMHVPLA 60 ERCEAVVTIA YEAQARISDP VYGCVAHIFA LQQQVASLQA QLMQLRAQVA QNSIDPRLLE 120 NYCPTNIMGG GGSMNLAYPN IHSMSPQSSI DSGDHSSSGP SMMQDVLYRE DVPLQPCIKR 180 RTPQDELNEL QALALTMMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-53 | LBD family protein |