PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89951.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 323aa MW: 37011.1 Da PI: 4.8232

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	54	107	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k RWR89951.1 54 KKRRLTNDQVKALEKTFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 107 56689************************************************9 PP
2	HD-ZIP_I/II	130.2	8.3e-42	53	144	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEk+y Lk++ydalk + ++L++++e+L +e+ RWR89951.1 53 EKKRRLTNDQVKALEKTFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKEYGLLKANYDALKLNYDSLHQDKEALLAEIG 144 69*************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MKRLSSSDSL AAVISIRPPS TEDKSSEGNR GFKSILDGLE DEEYIEESGQ PSEKKRRLTN 60 DQVKALEKTF EVENKLEPER KVKLAQELGL QPRQVAVWFQ NRRARWKTKQ LEKEYGLLKA 120 NYDALKLNYD SLHQDKEALL AEIGELKVKQ QREEKRTDSI FPIIKEEMVL SESHNKDPEL 180 NQVSGASKGS EKETNHDPDH SYFRASICKD LKDRSSDSDC SVILNEENSP NGAISLETFP 240 QQMVGVSPFT SSFRSDCCYS MSSSSFNCMP FEDSKVFMNT QKACHQFLKM EENSNYFHAE 300 EPCSFFSDEE ASILSWYSSE QWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	83	KKRRLTNDQVKALEKTFEVENKLEPERKVK
2	102	110	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-63	HD-ZIP family protein