PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89766.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31456.3 Da    PI: 7.3781
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-18123177256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  RWR89766.1 123 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 177
                 788899***********************************************98 PP
2HD-ZIP_I/II128.23.6e-41123212191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
   RWR89766.1 123 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 212
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MLVVERDDDL GLSLSLSSSE TRNALQLNLM PSMVASSSHF QKSPWNDVFG TSGETRPFLR  60
GIDVNRAPST VDVEEEAGVS SPNSTLSSIS GKRSERDPTG EENEVERACS RGLSDEEDGD  120
GSRKKLRLSK DQSAVLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ  180
TEVDCEFLKR CCENLTEENR RLQKEVQELR ALKLSPQFYM HMTPPTTLTM CPSCERVALS  240
SHATNTNTTT TQTSSIPIPP WAAAAASAPP PPIRAFDTPS RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128SRKKLRL
2172180RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.14e-86HD-ZIP family protein