PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89621.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 741aa MW: 81334.6 Da PI: 7.2598

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.8	5.8e-25	158	259	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el RWR89621.1 158 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELIAKDLHGKEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDNGEL 252 99**************************9743..345679********************************************..3489999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ RWR89621.1 253 RLGIRRA 259 **996 PP
2	Auxin_resp	124.9	5.3e-41	284	365	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s+ksvF+++YnPras+seF+++++k++k +++++svGmRfkm+fe+ed++err++G+v+g+sd+dp+rWp+SkWr+L RWR89621.1 284 VANAVSMKSVFHIYYNPRASPSEFIIPYRKFSKCFDHSFSVGMRFKMRFESEDAAERRYTGLVTGISDMDPIRWPGSKWRCL 365 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence
MGIDLNAVDD AFENHPSPSP SSSSSFSSSV SSSTSASFPS NSPPSSTVCL ELWHACAGPL 60 ISLPRKGSFV VYLPQGHLEQ MVDYCSGAVY DLPPHILCRV IDVKLHAEAA TDEVYAQVSL 120 VPESEQKVEE KLQEVETTGD GEEEEIDGLS KSSTPHMFCK TLTASDTSTH GGFSVPRRAA 180 EDCFPPLDYR QQRPSQELIA KDLHGKEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD 240 AVLFLRGDNG ELRLGIRRAV QLKNGGPYSV PCGQMLNLGT LAAVANAVSM KSVFHIYYNP 300 RASPSEFIIP YRKFSKCFDH SFSVGMRFKM RFESEDAAER RYTGLVTGIS DMDPIRWPGS 360 KWRCLLVRWD DDVETHRHNR VSPWEIEPSS SVSGSSNSSV PGSKRTKMCL PVPNGNGLLD 420 FGEPVGFQKV LQGQEILGFR APHTNGVGMS NCQPSETRGS FPDPNHCQVA ALGNGIRFPP 480 GDFETPRKGV GFGESVRFNK VLQGQEIFPS KTPFGRGVLV DSRPLESGGS EIFKGFHLSS 540 AGSRQPLMMS GFNTELQPSA PSVQAYSPSS VLMFQQARTR DPYPCTSYGI NHHQKAGLVS 600 TYLGLYHQSD ASKAKHMSAP SRPYHLGEDL GETYPLCHLP KERNHLGTVG APVLVDKANP 660 RWNGKVAVPK DKSGCRLFGF SLTKEAEVAE ELAASPSSTE DLNYETPLLQ STQSMGWETV 720 QGQMHSQHQG LATLQVEVTL K

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence

MGIDLNAVDD AFENHPSPSP SSSSSFSSSV SSSTSASFPS NSPPSSTVCL ELWHACAGPL  60
ISLPRKGSFV VYLPQGHLEQ MVDYCSGAVY DLPPHILCRV IDVKLHAEAA TDEVYAQVSL  120
VPESEQKVEE KLQEVETTGD GEEEEIDGLS KSSTPHMFCK TLTASDTSTH GGFSVPRRAA  180
EDCFPPLDYR QQRPSQELIA KDLHGKEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD  240
AVLFLRGDNG ELRLGIRRAV QLKNGGPYSV PCGQMLNLGT LAAVANAVSM KSVFHIYYNP  300
RASPSEFIIP YRKFSKCFDH SFSVGMRFKM RFESEDAAER RYTGLVTGIS DMDPIRWPGS  360
KWRCLLVRWD DDVETHRHNR VSPWEIEPSS SVSGSSNSSV PGSKRTKMCL PVPNGNGLLD  420
FGEPVGFQKV LQGQEILGFR APHTNGVGMS NCQPSETRGS FPDPNHCQVA ALGNGIRFPP  480
GDFETPRKGV GFGESVRFNK VLQGQEIFPS KTPFGRGVLV DSRPLESGGS EIFKGFHLSS  540
AGSRQPLMMS GFNTELQPSA PSVQAYSPSS VLMFQQARTR DPYPCTSYGI NHHQKAGLVS  600
TYLGLYHQSD ASKAKHMSAP SRPYHLGEDL GETYPLCHLP KERNHLGTVG APVLVDKANP  660
RWNGKVAVPK DKSGCRLFGF SLTKEAEVAE ELAASPSSTE DLNYETPLLQ STQSMGWETV  720
QGQMHSQHQG LATLQVEVTL K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-174	ARF family protein