PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89345.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family AP2
Protein Properties Length: 823aa    MW: 90573.3 Da    PI: 5.7642
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-173888155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + ykGVr++   g+Wv+e+r+p   +k+ r++lg+f t+e+Aa+a++ a+ +l+g
  RWR89345.1 38 PVYKGVRRRN-GGKWVCEVREP---NKKSRIWLGTFPTPEMAARAHDVAAMALRG 88
                68*****887.9******9998...347*************************98 PP
2AP250.64.9e-16252302155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++    +Wv+e+r+ps+   + r++lg+f t+e+Aa+a++ a+ +l+g
  RWR89345.1 252 PVYRGVRRRN-GDKWVCEVREPSK---KSRIWLGTFPTPEMAARAHDVAAMALRG 302
                 68*****877.9*********864...6*************************98 PP
3AP251.13.3e-16447497155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++    rWv+e+r+p   gk+ r++lg+f t+e+Aa+a++ a+ +l+g
  RWR89345.1 447 PVYRGVRRRN-GDRWVCEVREP---GKKSRIWLGTFPTPEMAARAHDVAAMALRG 497
                 68*****877.9******9998...657*************************98 PP
4AP250.74.4e-16649699155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++    rWv+e+r+p   gk+ r++lg+f t+e+Aa+a++ a+ +l+g
  RWR89345.1 649 PVYRGVRRRN-GDRWVCEVREP---GKKSRIWLGTFPTPEMAARAHDVAAMALRG 699
                 68*****877.9******9998...657************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    
MVRISNESAP EEEVFATVAT SPPKRRAGRR KFHETRHPVY KGVRRRNGGK WVCEVREPNK  60
KSRIWLGTFP TPEMAARAHD VAAMALRGRS ACLNFADSAW LLPLPASANA KDVQKTAAEA  120
AEAFRPSSSR LKSGNDVRPR PENLTLPPSK DLYMDEQEDS GTGLPGFLTR LAEGVLFSPP  180
PRLGGGFHIS NSSNSNFHSC DEAPETTSSS PSDKSTHSHS SFLDEETSFA TVATSPPKRQ  240
AGRKKFHETR HPVYRGVRRR NGDKWVCEVR EPSKKSRIWL GTFPTPEMAA RAHDVAAMAL  300
RGRSACLNFA DSAWLLPIPA SASAKDIQKA AAEAAEAFRP SESESESVSS QDASAESRTV  360
STEDVELLYM NEEVNFGMDM PGLLASMAEG LLLSPPPPQS LSGFHWDDVV EDCVDMFLDE  420
EQFFTTVTTS PPKRRAGRKK FRETRHPVYR GVRRRNGDRW VCEVREPGKK SRIWLGTFPT  480
PEMAARAHDV AAMALRGRSA CLNFADSAWL LPIPASASAK DIQKAAAEAA EAFRPSESES  540
ESVSSQDEDV GAENRTVSTD DLLLLYTDEE VNFGMDMPGL LASMAEGLLL SPPHSSSGFQ  600
WDDVEDSVDI SFTHSHSNFL DEDQFFATVT TSPPKRRAGR KKFRETRHPV YRGVRRRNGD  660
RWVCEVREPG KKSRIWLGTF PTPEMAARAH DVAAMALRGL SACLNFADSA WLLPIPASAS  720
AKDIQKAAAE AAEAFRPSES ESESVSSQDE DVGAENRTVS TDDLLLLYMD EEVNFGMDMP  780
GLLASMAEGL LLSPPHSSSG FHWDDVEDCV DMSLWSYSNP IGC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-47ERF family protein