 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | RWR87997.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
|
||||||||
| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 321aa MW: 36795.8 Da PI: 4.849 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 58 | 1.6e-18 | 84 | 137 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+ q++ Le+ Fe ++++ e++ +LA+ lgL+ rqV +WFqNrRa++k
RWR87997.1 84 KKRRLTAAQVKFLERNFEVENKLEPERKIQLARDLGLQPRQVAIWFQNRRARWK 137
56789************************************************9 PP
| |||||||
| 2 | HD-ZIP_I/II | 124 | 7.2e-40 | 83 | 173 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl++ qvk+LE++Fe e+kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkd+++L ++y++lk++ e L ke+e+Lree+
RWR87997.1 83 EKKRRLTAAQVKFLERNFEVENKLEPERKIQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDFDTLEASYNNLKNDYEILLKEKEKLREEV 173
69**************************************************************************************987 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 321 aa Download sequence |
MARRRVCGAS NMTVMLQNGG IACSADALGS LLSSSSTPRY RGVRSMVNFE GVNGNTPDRS 60 FYRAFDHEET GDEDLDECFQ RPEKKRRLTA AQVKFLERNF EVENKLEPER KIQLARDLGL 120 QPRQVAIWFQ NRRARWKTKQ LEKDFDTLEA SYNNLKNDYE ILLKEKEKLR EEVLLLTNKL 180 IHRDKGQETS ATSELNEPNL PLQKPVNDAA QVKEHDLPTM VPKQEDLSSA NSAIFDSDSP 240 HYTDGGHSSL VEPANSSNIF EPDHSDLSHA DEDEEDHLSR SLLHPTYHFP KLEDDVYPDP 300 PVNSCFYSFP VEDQVCCYWP Y |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 132 | 140 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 3e-40 | HD-ZIP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|