PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87934.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33907.6 Da    PI: 7.2522
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF405e-13950142
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                k+ie+k +r vt+skR++g++KKA+ L    ++evavi f  
  RWR87934.1  9 KKIEDKQKRFVTLSKRKEGLFKKAKKLALDFGVEVAVIGFTV 50
                68************************************8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGKRKIEMKK IEDKQKRFVT LSKRKEGLFK KAKKLALDFG VEVAVIGFTV GGRPFSFGSS  60
SVDDIIDKYD QNNRLQFIEQ GKIHTVIHQE KSNIKLINSE GSIGNELMEY ASALTMLKDM  120
PVQTMAGISQ KNNRVDDHSI VKDASFTYSG LGEYNKSSYC NNAPPLVEVQ HKHENEMNSL  180
ITSSTGDKIL VDSSYHVSPG SGTDLFSTDD FSCSHSIKDP TFLPTLAAVV GSEEEAKKKI  240
NSVCTMTYIG FGALISEELS FKVKGLPGVL WVLLDSYLDV PNRDYGGDLF VDGKVINRPQ  300
FHSMRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-13M-type_MADS family protein